Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00052 ATGTTGTCAACCCCGCCGAGCCGAGAAAACCCTACTTTGCATTCACAGAGCATAGCTCGGACAATTGTTCCAGAGTCAGTGTTGAAGAAGCGCAAGAGGGAAGAGGAGTGGGCGTTGGCCAAGAAGCAAGAACTCGATGCTGCCAAGAAGAAGAGAGCTGAGAGCCGCAAGCTCATCTACAACAGAGCTAAGCAGTACGCAAAGGAGTACGATCACCAGGAAAAGGAGTTGATTCGGTTGAAGCGCGAGGCCAAGCTGAAAGGTGGATTTTATGTGGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGGACCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAATGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGGATACCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGAACTGCTCTAACTGACAACTCCATCATTGAGCAGGCTCTGGGCAAATATGGAATCATATCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAGAAGAGAAACCACTATGTTGAGGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA 774 0.4548 MLSTPPSRENPTLHSQSIARTIVPESVLKKRKREEEWALAKKQELDAAKKKRAESRKLIYNRAKQYAKEYDHQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00052 257 FunFam 60S ribosomal protein L7 98 202 - -
Pumo7g00052 257 Pfam Ribosomal protein L30p/L7e 99 149 IPR016082 -
Pumo7g00052 257 Coils Coil 63 83 - -
Pumo7g00052 257 Gene3D - 98 200 IPR036919 -
Pumo7g00052 257 Gene3D - 201 257 IPR036919 -
Pumo7g00052 257 Pfam Ribosomal L30 N-terminal domain 23 94 IPR012988 -
Pumo7g00052 257 ProSitePatterns Ribosomal protein L30 signature. 117 149 IPR018038 -
Pumo7g00052 257 FunFam 60S ribosomal protein L7 203 257 - -
Pumo7g00052 257 PANTHER 60S RIBOSOMAL PROTEIN L7 21 257 IPR039699 -
Pumo7g00052 257 NCBIfam 60S ribosomal protein uL30 24 257 IPR005998 GO:0000463|GO:0003735|GO:0022625
Pumo7g00052 257 SUPERFAMILY Ribosomal protein L30p/L7e 98 257 IPR036919 -
Pumo7g00052 257 CDD Ribosomal_L7_archeal_euk 98 257 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00052 Pumo-Chr7 727496 729255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00052 15 257 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.774 2.22e-157 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00052 K02937 - gmx:100305682 449.129