LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g00036	ATGAAGGAGAAGGAGAAGGAGAAGGAGACAGAGAAGAAGAAGTACCCCATCGGGGCCGAGCATTACCTTCTATACGAGGAGATTGGACAGGGTGTAAGCGCTTCTGTCCACCGCGCTCTCTGCGTCCCCTTCAACGAGGTCGTCGCCATCAAAATCCTCGACTTCGAACGTGACAATTGCGATCTGAACAACGTTTCTCGTGAGGCCCAAACAATGATCCTGGTGGACCACCCTAACGTGCTGAAATCACACTGCTCCTTCGTGAGCGAGCACAATCTGTGGGTAGTTATGCCCTTCATGTCCGGCGGTTCATGCCTCCACATATTGAAAGCCGCCCACCCCGACGGATTTGAGGAAGTTGTCATTGCAACCATTCTCAAAGAGGTCTTGAAGGGTTTGGAGTACCTTCACCATCACGGCCACATCCACCGCGACGTCAAGGCCGGCAACATTCTCATCGATTCACGCGGCGCCGTCAAGCTCGGCGATTTTGGTGTCTCTGCCTGCCTCTTTGATTCCGGTGACCGCCAACGCACCAGGAACACATTCGTCGGAACACCTTGCTGGATGGCACCTGAGGTCATGGAGCAACTTCACGGCTATAATTTCAAAGCTGACATCTGGTCATTTGGTATAACCGCCTTGGAGCTTGCTCATGGTCATGCTCCTTTCTCAAAGTTCCCACCAATGAAGGTACTGCTCATGACTCTGCAAAATGCACCCCCTGGCCTTGACTACGAAAGGGATAGGAAGTTCAGTAAGTCTTTTAAGCAGATGATTGCCAGTTGCTTGGTAAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTAAAGCATTCCTTCTTTAAGCAGGCTCGCTCCAGTGATAGTATAGTGAAAAAGCTTTTGGAGGGGTTGCCTGCTTTAGGTGACCGAATGGAGGCCCTAAAGAGAAAAGAAGAAGATATGCTCGCACAAAAGAAAATGCCTGATGGAAAGATGGAGGAATTATCACAGAACGAATACAAACGAGGAATTAGTGGCTGGAACTTCAATCTTGATGATATGAAGGCTCAGGCTTCCTTGATCCACGATTTCGACGATGCTATGTCCGATATCAACCATGCAGGAAGTTCAAGTTCTTTATCTACACTTGATTCACAAGATAAGCAATTGCCAAGCACAATTCACAAACCTTCTCGATCTGCTGACATGGAAGAAAATGATGAGATGCGAAATCAATCAGCTTCTGTTCCCGTAGTTGATTCTGCAGCAAACGATGCCAAAACTAGGTTCGAAAAATCTGATGATGACTCTAGCATCACCAGTTCAAGCCATGAACCACAAACTTCTTCATCCTGTCTTGATGATCACGTGGACAGTAATTTGGGTGAAAAAACTGATATGGAAAATGGTGGAAGATTCATGGAGGGAATGGCTACCCATTATTATCATAGAAGAGGATGTTCATCTAGCATCTTACCTGAAGTTACTCTTCCACCTATTCGAGCAGAAGGTGAGAAACCACAAAATCTGCCCCAGAACATTTCAAGTTGCAATGCAACTTCAGTTCCACAGACAGGAGAGGACGTGCTTACTGAACTTCCTTCTAGAGTCTCAAAATCATCAGCTAATTCTGATGACACCGATGAGAAATCAAAGGTGCCAGTTGTACAGCAGAGAGGACGTTTTAAGGTTACATCTGAGAATGTTGACCCAGAAAAGGTGGCCCCTTCTCCTGTACTGCAAAAGAGCCATAGCATGCAGGTTTTTAGCCAGCATAATGCTGCTTCTATACATCCAACTTTGCCCTTATTACCAGCATCTGATGCTACATCACCAAATCTTTCTGGCTGCTCTCTGTTTCCTGTGTTGCACTCTGTACTGCAGACAAATATTCTTCAAAGGGAGAGCATTTTAAGTTTAATGAAGCAAATTACTGCCGGTGACTCTTCAGCTGATGGCACAGGTAACCCAGCACAGATAGCAGCAACTGAGAAATCTTTGCTTGAAGCAGCTCACGAGAGGGAAAAGGAGTTACTTCATGAGATAACAGAGTTGCAGTGGAGGCTTATCTGTACCCAGGAGGAGCTTCAAAAATTGAAAACAGAAAACGCCCAGGTGTGA	2109	0.4628	MKEKEKEKETEKKKYPIGAEHYLLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVSEHNLWVVMPFMSGGSCLHILKAAHPDGFEEVVIATILKEVLKGLEYLHHHGHIHRDVKAGNILIDSRGAVKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSSDSIVKKLLEGLPALGDRMEALKRKEEDMLAQKKMPDGKMEELSQNEYKRGISGWNFNLDDMKAQASLIHDFDDAMSDINHAGSSSSLSTLDSQDKQLPSTIHKPSRSADMEENDEMRNQSASVPVVDSAANDAKTRFEKSDDDSSITSSSHEPQTSSSCLDDHVDSNLGEKTDMENGGRFMEGMATHYYHRRGCSSSILPEVTLPPIRAEGEKPQNLPQNISSCNATSVPQTGEDVLTELPSRVSKSSANSDDTDEKSKVPVVQQRGRFKVTSENVDPEKVAPSPVLQKSHSMQVFSQHNAASIHPTLPLLPASDATSPNLSGCSLFPVLHSVLQTNILQRESILSLMKQITAGDSSADGTGNPAQIAATEKSLLEAAHEREKELLHEITELQWRLICTQEELQKLKTENAQV	702

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g00036	702	ProSiteProfiles	Protein kinase domain profile.	22	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo7g00036	702	Pfam	Protein kinase domain	25	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo7g00036	702	SUPERFAMILY	Protein kinase-like (PK-like)	20	284	IPR011009	-
	Pumo7g00036	702	Gene3D	Phosphorylase Kinase; domain 1	10	99	-	-
	Pumo7g00036	702	MobiDBLite	consensus disorder prediction	371	392	-	-
	Pumo7g00036	702	FunFam	serine/threonine-protein kinase BLUS1 isoform X1	103	336	-	-
	Pumo7g00036	702	MobiDBLite	consensus disorder prediction	371	467	-	-
	Pumo7g00036	702	MobiDBLite	consensus disorder prediction	421	435	-	-
	Pumo7g00036	702	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	11	697	IPR047173	GO:0043539
	Pumo7g00036	702	ProSitePatterns	Protein kinases ATP-binding region signature.	28	51	IPR017441	GO:0005524
	Pumo7g00036	702	MobiDBLite	consensus disorder prediction	436	452	-	-
	Pumo7g00036	702	Coils	Coil	678	698	-	-
	Pumo7g00036	702	MobiDBLite	consensus disorder prediction	504	524	-	-
	Pumo7g00036	702	FunFam	Serine/threonine-protein kinase BLUS1	11	99	-	-
	Pumo7g00036	702	SMART	serkin_6	22	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo7g00036	702	CDD	STKc_OSR1_SPAK	20	283	-	-
	Pumo7g00036	702	MobiDBLite	consensus disorder prediction	538	552	-	-
	Pumo7g00036	702	MobiDBLite	consensus disorder prediction	498	556	-	-
	Pumo7g00036	702	Gene3D	Transferase(Phosphotransferase) domain 1	103	336	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo7g00036	Pumo-Chr7	576103	583927	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo7g00036	11	684	MAP Kinase Kinase Kinase Kinase	AT1G79640	65.362	0.0	881

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Pumo7g00036		Pkinase	5.9e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g00036	K08835		-	gmx:100780339	1301.58