Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03285 ATGGCATCCAATAATCATTATGAGATCATGGACGATGAGGGATTTGACTGGGAAGCAGCTGCTAGAGAAATCGACGTGGTTTGCCAGATGACCAGTGACGCAAAGGGAAAGGGAAAGGTTTATGAGAAGAAAAAGCAGCAATCTACTCTCGATGAGTTCGTGTCTATTGCCAATACCAAGAAAGAAACCCCGACACCGCAGTTCCAAGAAGATGACCAAAACCCTACTTTAGTCCACCAAATTGACGCCGAGGCGGCCAAAACCTGGATATATCCAGTTAATGTTCCTCTCCGTGAATATCAATTTGATATCACCCAGTCCGCACTCTTCTCAAACACATTGGTGGCCTTGCCAACGGGACTTGGCAAAACACTCATTGCCGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTTGTCATGCAGCAGATAGAAGCATGCCACAATATCGTGGGAATACCTCAAGAATGGACAGTTGACATGACTGGTCAGCTAAGTCCTCCCAAAAGAGCTCAATTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAGGATATTCATTCTGGTACATGTTTGGTGAAGTACTTGGTATGTCTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACGCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCGGTACAGCTGAGAATATTAGCGTTAACTGCAACGCCGGGATCAAAGCAACAGACAGTCCAGTCTGTCATTGATAATCTGCATATCTCCAGACTTGAATATCGCAGTGAAACTGACCATGATGTTATCTCATATGTTCACAATAGGAAGATAGAATTGATACAGGTTGCAATGGGCTCAGAAGCTGTAGAAATAAACAATAAGTTTATGGAAGTAATACGCCCTATAGTAGCCCGGCTTACAAATATTGGGGTCATTCAGAACAGAGATTACCGCACTTTGAGCCCTTGTCAATTACTTGAAATAAGGGAAAAGTTTCGTCAGCGGCCTAGGCAAGATCTTTCTCATGTCAACTATGAAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCATAAGTTACTCTCAAGTCACGGAATAAGGCCAGCATATGAGATGCTTGAGAGAAAATTGAAGCAAGGATATTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTGAAAGCAAGGCAACTAATGCAGCAATGTTTGTCTCACGGAGCATCTAGTCCAAAATTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACAAATGATCCACAAAACTCCAGGGTAATTATCTTCTCCAATTACAGAGAAAGTGTCAGGGATATAATGAATGCACTTGGAGATATTGGGGAATTAGTCAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGTGCCTATAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAGTTGATATCCTTTGA 1686 0.4128 MASNNHYEIMDDEGFDWEAAAREIDVVCQMTSDAKGKGKVYEKKKQQSTLDEFVSIANTKKETPTPQFQEDDQNPTLVHQIDAEAAKTWIYPVNVPLREYQFDITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRAQFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRELMAVPVQLRILALTATPGSKQQTVQSVIDNLHISRLEYRSETDHDVISYVHNRKIELIQVAMGSEAVEINNKFMEVIRPIVARLTNIGVIQNRDYRTLSPCQLLEIREKFRQRPRQDLSHVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGYFAKFMSKNEVILKARQLMQQCLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMNALGDIGELVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDIL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03285 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 430 561 IPR001650 -
Pumo6g03285 561 Pfam Helicase conserved C-terminal domain 436 553 IPR001650 -
Pumo6g03285 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 558 IPR027417 -
Pumo6g03285 561 Gene3D - 423 561 IPR027417 -
Pumo6g03285 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 272 IPR014001 -
Pumo6g03285 561 Gene3D hef helicase domain 301 422 - -
Pumo6g03285 561 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 6 558 - -
Pumo6g03285 561 FunFam Fanconi anemia, complementation group M 92 287 - -
Pumo6g03285 561 CDD FANCM_ID 304 418 IPR039686 GO:0006281|GO:0043138
Pumo6g03285 561 Gene3D - 93 287 IPR027417 -
Pumo6g03285 561 SMART ultradead3 93 293 IPR014001 -
Pumo6g03285 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 400 IPR027417 -
Pumo6g03285 561 CDD SF2_C_FANCM_Hef 428 561 - -
Pumo6g03285 561 CDD DEXDc_FANCM 95 276 IPR044749 GO:0005524
Pumo6g03285 561 Pfam Type III restriction enzyme, res subunit 110 254 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pumo6g03285 561 SMART helicmild6 460 554 IPR001650 -
Pumo6g03285 561 FunFam ATP-dependent RNA helicase, putative 418 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03285 Pumo-Chr6 75982048 75990813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03285 389 552 Eukaryotic Initiation Factors Gene Family AT3G13920 26.404 3.70e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03285 K10896 - gmx:100820078 1052.35