Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03266 ATGATAATGAAGACGCAGCAGCAGCAGCAACCTCCTCAGCCTGAAGCTACCACTACCAATACCTGCGAAGAGAAGAAGAGCATAAACCCGGAGCTGTGGCAAGCTTGTGCAGGGCCTTTGGTTAACCTTCCTCCCTCAGGTACACACGTCATCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCATCTTTGAACAAAGATGTCGACGCTCAAATTCCCAACTATCCCAATCTCCCTTCCAAGTTACTCTGTCTCCTTCACAATCTCACTTTGCATGCTGATCCCGAAACAGATGAAGTATACGCTCAGATGACTCTTCAACCGGTCCCTTCTTTTGACAAGGATGCTCTATTGAGATCAGATCTTGCTCTCAAGTCCACCAAGCCACAACCCGACTTCTTCTGCAAACAACTCACCGCCAGTGATACAAGCACTCACGGAGGTTTCTCTGTCCCTCGTCGTGCCGCCGACAAGATTTTCCCTCCTCTCGATTATTCTATGCAACCTCCTGCTCAAGAACTTGTCGCCAGGGATTTGCACGACAGCCTTTGGACATTCCGCCACATATACCGTGGACAACCAAAACGTCATTTGCTTACCACTGGATGGAGTCTATTTGTTAGTGGAAAGAGGCTTTTTGCCGGAGACTCTGTTTTGTTTATTAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGTGCTAACAGGCAACCCACCAATATATCCTCCTCAGTATTATCAAGTGACAGTATGCACATTGGAATTCTTGCTGCAGCCGCTCATGCAGCTGCAAATAATAGCCCCTTCACCGTCTTTTATAATCCCAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCAGTGTACAGCCACCAACCATCACTTGGCATGCGTTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCTGTGCGATGGAAAAACTCTCAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGAGAAAAGCGTAGCAGGGTCTCAATCTGGGAGATTGAACCAGTGACTGCTCCATTTTTCATCTGTCCCCCTCCATTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCTGATGATGAATTGACTGATTTTGATAACATTTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGCTCAATGGATGAACATGCAGCAGCAAAATCCTGCACTGGCTAGCTCATTGCAGCCAAATTATGCACCTTCCTTATCGGGATCTATTTTGCAAAATATTCCTGGAGCTGATATTTCTCGTCAGCTGGGATTTTCTGCTCCACAAATTTCTCCGTCAAACAATGTAGCCTTCAATACTCAGAGGCTTCTTCAGACCGCTCAACAACTGGATCACCTTCAGAAGCTACCATCTGCATCTAGCACATTGGGAACAGTCCTGCCACCACAGCAACAGTTGGGTGATATCACTCAACAACCAAGGCAGAACTTGGCAAATCAAACTATCCCTCAGGGTCAAGTTCAGGCCCAACTCTTGCATCCCCAGAACATTGTCCAAACCAACAATATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAACTCCATAGAAGCCTCTCTCAGAACCCATCACAGCAGCAGCAGCAGCAGACAATTATTGGTCAGAATCAACAACAAAATTTGATCCAGTCCCCTATGCCTGATCATGTTCAACAATTACAGATGTCCGACAATCAGATTCAGTTGCAGTTGTTACAGAAGCTTCAACAACAAAAACAAACGTTCTTGGCTCAACAAACTGCATTGCAGCAGCCTACTCAACTTACTCAAGTCCAGGATCAGCAAAGACAGCTTTTAGATAAAACACACAACTTGTCTAGAGCACTAACACCTGGTCAAGTACTGGAAATTCCTCCTATACTTCAGAATTCACTCCCCGAGGCTAATTCTATCTCAAATCAGATGACAAAGGCCAATTGCCAGAACAATATTCAATTCTCTCAGCAGCCCAAGCTTCAACAGCAGCAACCTGGTTTGCTTTCTGAAATGTCTGGCCACATGGCACTTCTCCCTACCCCTACAACTAACCAACTTTCTGCTGCTGGCAGTAGTATACTGACTGGAGCAGGTGGTGCAGGGCAATCTGTGGTTACTGATGATGTTCCATCTTGCTCCACCTCACCTTCTACAAATAACTGTACCAATGCACTTCCACCATTGATAAATTCCCGATTCCAGAGAAGCACAATGGTAGGGGATGACATGGCCCAGTCTGCTGCCACAATCTTGAGTTCAAGTGCCTTAGAAACTATGCCATCAAATGCAAACTTGTTGAAAGATTTACAGCCAAAGTCTGAAGTTAAGCCGTCTCTGAATATTTCCAAAAATCAGAATCAAGGACATTTTGGTCCTCAGACGTACTTGAATGGTAATGCTGCCCATACAGATTGTTTGGACACATCATCTTCTACAACATCAGTTTGCCTTTCTCAGAGTGACGCTCATATGCATCAGAATAACAATCCATTATCTTACAATCCACAGTCTATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGAGCAATATTCCTTATGCCAATAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCCCTTTTAACCAAAGGCACATTGGGGTTGGCGAAGGATTTGTCTAATAATTTCTCTTCAGAAGGCATGCTCGGTAATTATGAAAATAACAGAGATGCTCAGCAGGAACTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAACTTCTTGAATAGGGGTCCATGGGCTCCACCACCAGCACCGCCACCGCCACCTCTGCCACCAGCACAGTTTCAACGGATGAGGACATATACCAAGGTATATAAACGCGGAGCTGTGGGAAGGTCCATAGACATAACGCGGTATTCAGGTTATGAGGAGCTTAAACAGGATCTAGCTCGTAGGTTCGGCATAGAGGGACAGCTAGAGGATCGGCAAAGGATAGGTTGGAAACTTGTCTATGTAGATCATGAGAGTGATGTTCTACTAGTGGGAGATGACCCTTGGGAGGAATTTGTGAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGGGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATACTTAA 3366 0.4525 MIMKTQQQQQPPQPEATTTNTCEEKKSINPELWQACAGPLVNLPPSGTHVIYFPQGHSEQVAASLNKDVDAQIPNYPNLPSKLLCLLHNLTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAADKIFPPLDYSMQPPAQELVARDLHDSLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDELTDFDNIFKRTMPWLGDDMCMKDPQGLPGLSLAQWMNMQQQNPALASSLQPNYAPSLSGSILQNIPGADISRQLGFSAPQISPSNNVAFNTQRLLQTAQQLDHLQKLPSASSTLGTVLPPQQQLGDITQQPRQNLANQTIPQGQVQAQLLHPQNIVQTNNILQQQQPSIQNHQLHRSLSQNPSQQQQQQTIIGQNQQQNLIQSPMPDHVQQLQMSDNQIQLQLLQKLQQQKQTFLAQQTALQQPTQLTQVQDQQRQLLDKTHNLSRALTPGQVLEIPPILQNSLPEANSISNQMTKANCQNNIQFSQQPKLQQQQPGLLSEMSGHMALLPTPTTNQLSAAGSSILTGAGGAGQSVVTDDVPSCSTSPSTNNCTNALPPLINSRFQRSTMVGDDMAQSAATILSSSALETMPSNANLLKDLQPKSEVKPSLNISKNQNQGHFGPQTYLNGNAAHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLSYNPQSMLFRDNSQDGEVQADARSNIPYANNIDSQMGMPLNPDSLLTKGTLGLAKDLSNNFSSEGMLGNYENNRDAQQELSSSMVSQTFGVPDMAFNSIDSTIDDSNFLNRGPWAPPPAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03266 1121 MobiDBLite consensus disorder prediction 559 587 - -
Pumo6g03266 1121 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Pumo6g03266 1121 ProSiteProfiles PB1 domain profile. 1009 1093 IPR000270 GO:0005515
Pumo6g03266 1121 FunFam Auxin response factor 1004 1098 - -
Pumo6g03266 1121 CDD B3_DNA 134 226 IPR003340 GO:0003677
Pumo6g03266 1121 MobiDBLite consensus disorder prediction 750 764 - -
Pumo6g03266 1121 Gene3D - 133 236 IPR015300 -
Pumo6g03266 1121 SUPERFAMILY DNA-binding pseudobarrel domain 125 264 IPR015300 -
Pumo6g03266 1121 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 625 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo6g03266 1121 MobiDBLite consensus disorder prediction 741 764 - -
Pumo6g03266 1121 MobiDBLite consensus disorder prediction 1 21 - -
Pumo6g03266 1121 FunFam Auxin response factor 133 237 - -
Pumo6g03266 1121 MobiDBLite consensus disorder prediction 988 1004 - -
Pumo6g03266 1121 Gene3D - 1004 1098 - -
Pumo6g03266 1121 Pfam AUX/IAA family 1008 1094 IPR033389 -
Pumo6g03266 1121 FunFam Auxin response factor 299 370 - -
Pumo6g03266 1121 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Pumo6g03266 1121 Gene3D - 299 370 - -
Pumo6g03266 1121 MobiDBLite consensus disorder prediction 983 1004 - -
Pumo6g03266 1121 SUPERFAMILY CAD & PB1 domains 1022 1087 - -
Pumo6g03266 1121 Pfam Auxin response factor 261 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo6g03266 1121 SMART B3_2 135 237 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03266 Pumo-Chr6 75694254 75700741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03266 24 479 B3 DNA Binding Superfamily AT1G19220 73.638 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo6g03266 B3 2.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03266 - - ccaj:109803454 1944.09