Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03253 ATGGGCAGAAAATGCTCACATTGTGGAAACATTGGCCATAACTCCAGGACCTGCGCATCTTTCAGAGCAACTTTTGTAGGGGTTCGTCTCTTTGGGGTTCAACTAGACATATCAAGCTCTTCTTCTCTTACCATGAAGAAAAGCTTTAGCATGGATTCCTTGCCCTCTTCATCCTCTCCATCTTCCTCCTTTTCTTCCTCAAGAATATCCATTGACGACCATAATTCTTCTGACAAAACCTCTATTCGCTATCTATCAGATTCAGATGGCCTCATTGTTCGAGCACAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAAGAGCACCGAACATTCCTTGTTGGACTTGAGAAGCTGGGAAAAGGTGATTGGAGGGGTATCTCTAAAAACTATGTGACTACAAGAACCCCAACCCAAGTCGCTAGCCATGCTCAGAAGTACTTTATTCGGCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGTAACGGCAGCACAAATATAATTAGCTGCAAGTCATCAGGTGATTTAGTTTCTACTAAATCCAAATGTGAAATTGAGAAGGATGTCACCTTGTCACTTGTTCAATTACAAGATACCAAATTAGATGAGCAGAAAGATAGTGATAATTATTGTCAAGCTCAACCAGGTGGTGCAGAACATGAAGCTGTGCCCATGTGGCTTCATCCTCAGATGAAATCTTCTTCAAATAATAATGCAGCAGTTCCTGATCTAGAGCTCACTCTTGCAGTCCCCAAGGGCAAGGCTATGACCCTGGAACAAACTAAATCATCCCCAGATTCCTTCCTTCTTGGACCAATTAGCGTGACTTGA 852 0.4261 MGRKCSHCGNIGHNSRTCASFRATFVGVRLFGVQLDISSSSSLTMKKSFSMDSLPSSSSPSSSFSSSRISIDDHNSSDKTSIRYLSDSDGLIVRAQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISKNYVTTRTPTQVASHAQKYFIRLATMNKKKRRSSLFDLVGNGSTNIISCKSSGDLVSTKSKCEIEKDVTLSLVQLQDTKLDEQKDSDNYCQAQPGGAEHEAVPMWLHPQMKSSSNNNAAVPDLELTLAVPKGKAMTLEQTKSSPDSFLLGPISVT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03253 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 150 IPR006447 GO:0003677
Pumo6g03253 283 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Pumo6g03253 283 ProSiteProfiles SANT domain profile. 104 152 IPR017884 -
Pumo6g03253 283 SMART sant 100 150 IPR001005 -
Pumo6g03253 283 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Pumo6g03253 283 CDD SANT 103 148 IPR001005 -
Pumo6g03253 283 MobiDBLite consensus disorder prediction 52 81 - -
Pumo6g03253 283 FunFam transcription factor MYB1R1 102 153 - -
Pumo6g03253 283 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Pumo6g03253 283 PANTHER TRANSCRIPTION FACTOR KUA1 3 241 - -
Pumo6g03253 283 Gene3D - 102 154 - -
Pumo6g03253 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 152 IPR017930 -
Pumo6g03253 283 MobiDBLite consensus disorder prediction 52 71 - -
Pumo6g03253 283 Pfam Myb-like DNA-binding domain 103 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03253 Pumo-Chr6 75537664 75539335 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo6g03253 Myb_DNA-binding 8.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03253 - - gmx:778053 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03253 6 75537664 75539335 Pumo6g03253 6 75537664 75539335 ECH