LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g03250	ATGAGGCAAAAGGATTGTTATAGAAAGAAAGGTTGGTGTGGGAAGGTGATGGTGGTTGCAGTTGAAGCAACCAAAGAGGTTTCAAGGAGTGCTTTGGTGTGGACATTGACTAATGTTGCTCAACCAGGGGATTGTATTAAGCTGTTGGGTGTCATTCCCACTATCTGCTCAAACCACACTGATTGTATCACTACTCAGTGGAGATCCCCTTTAGGAACCATCTCAGATCAGAGAGAAGTTTGTCTAAATTCCTGCTCCCAAATGGTGCTTCAACTTCATGAATTATATGATCCAGAGAAGATAAAGATTAGAATAAAAATTCTTTCTGGTTCTTTACATGGAGCAGTGGCTGCTGAAGCCAAGAGAGCCCAATCAAGCTGGGTAATATTAGACAAAAAATTGAAAAAGGAAAAGAAATACTGCATGGAGGAGCTGAGTTGCAGTGTTGTAATCATAGAGCGATCTCGGCCAAACGTTCTGCGATTGAATTTGATCGGTCCAACAAATATGGAGCAGAATGCATTTCCTAGAAACATCAAAGGCAAGTCTGAACATGCAGATACAATTAGAGGTCCAGTTGTTGCTACTCCTGCTAGTAGTCTAAAACAAGGGTCAAACATGACTACAAGTATCGTTGGAACATCATCTACACCTGGGACTGTGACTTCACCATTTTATCAATATGATAATGATGAAGGACGAAGAAGAGGCTTTCCCTTTTCTCACAAGGAGCCGAAAAATCTGGAGGAAGGTGAATCCAATTCAGAGAGTGAAATTATTTTGAGTCTGTCATCCACTAGTTCATATTTTCAGCCATGGATTTCAAATGCAATTTGTGTTGATGACGAGTTTTCAAAACACAAGAGCATTAACGAGGCTTTGGTTTGTCCTAGCGAAGCATTGGTTCAGAAATTGGACCATGATCCTATCTTAGGAGTGCTTAATTGTAAACTTGATGTGAACTTAAGAAGAAGTGTCCCAAATGCCACTCCCCCATTGTGCTCTATTTGTCAGCATAAGGCACCTTTGTTTGGGAACCCTCCAAGATGGTTTACATTTGCTGCACTGCAACTTGCCACTGATGGATTTTCACAGGAAAATTTTTTGGCTGAAGGTGAGTTTGGTTCTGTACACCGTGGAGTCCTACCTGATGGGCAAGTAGTTGCTATCAAGCAGTACAAGTTAGCTGGTGGTACTCGAGGGGATGAAGATTTTTGGTCAGAAGTAGCGGTTTTAAGCTGTACACAACATCGTAATGTTGTGATGTTAATTGGGTTTTCTGTGGAGGATGGAAGAAAATTGTTGGTTTGTGAATATGCCTGCAATGGATCTCTATATTCTCATCTTCATGGACAAAATCAAAATTTATTGGATTGGTCTGCACGTCAAAAAATTGCAGTAGGGGCAGCTCGTGGTTTGAGGTACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGCGACATGAGGCCTAGTAATATCTTCCTTACTCATGACTTTGATGCATTAGTACGTCCATTTATATATTCTTTAATTTTACATTGTTCGATATATTTTTTTATCGCAATTAGCAACTTCATTTTAGTCCTTTTTCTTTTGTTTTTCCTACATCTTATTAGACTTTTATGTTAG	1635	0.3994	MRQKDCYRKKGWCGKVMVVAVEATKEVSRSALVWTLTNVAQPGDCIKLLGVIPTICSNHTDCITTQWRSPLGTISDQREVCLNSCSQMVLQLHELYDPEKIKIRIKILSGSLHGAVAAEAKRAQSSWVILDKKLKKEKKYCMEELSCSVVIIERSRPNVLRLNLIGPTNMEQNAFPRNIKGKSEHADTIRGPVVATPASSLKQGSNMTTSIVGTSSTPGTVTSPFYQYDNDEGRRRGFPFSHKEPKNLEEGESNSESEIILSLSSTSSYFQPWISNAICVDDEFSKHKSINEALVCPSEALVQKLDHDPILGVLNCKLDVNLRRSVPNATPPLCSICQHKAPLFGNPPRWFTFAALQLATDGFSQENFLAEGEFGSVHRGVLPDGQVVAIKQYKLAGGTRGDEDFWSEVAVLSCTQHRNVVMLIGFSVEDGRKLLVCEYACNGSLYSHLHGQNQNLLDWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPSNIFLTHDFDALVRPFIYSLILHCSIYFFIAISNFILVLFLLFFLHLIRLLC	544

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo6g03250	544	ProSiteProfiles	Protein kinase domain profile.	363	544	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo6g03250	544	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	485	497	IPR008266	GO:0004672\|GO:0006468
Pumo6g03250	544	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	335	439	-	-
Pumo6g03250	544	Gene3D	Phosphorylase Kinase; domain 1	334	439	-	-
Pumo6g03250	544	Gene3D	Transferase(Phosphotransferase) domain 1	441	517	-	-
Pumo6g03250	544	PANTHER	OS01G0750732 PROTEIN	251	506	-	-
Pumo6g03250	544	MobiDBLite	consensus disorder prediction	232	255	-	-
Pumo6g03250	544	MobiDBLite	consensus disorder prediction	232	253	-	-
Pumo6g03250	544	SUPERFAMILY	Protein kinase-like (PK-like)	343	505	IPR011009	-
Pumo6g03250	544	Pfam	Protein tyrosine and serine/threonine kinase	366	500	IPR001245	GO:0004672\|GO:0006468

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g03250	Pumo-Chr6	75506311	75509407	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g03250	322	520	Trihelix Transcription Factor Family	AT1G68690	45.000	1.01e-47	174

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Pumo6g03250		PK_Tyr_Ser-Thr	1.7e-22	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g03250	-		-	vun:114182477	696.427

Showing 1 to 1 of 1 entries

Previous1Next