Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03249 ATGGTGGAGTTGGCCATCAGCAGGTTGAAGAGGGAGCAATGCAACCGCACTAAACACGATTCTAGCTTCTCCCATTGGAAGATTCTGATTGGCCCTTCTGATTGGGAAGACCATTCCAAAGGAAAGGAAGGGTGTGCAAGGTACAGAATTCATAACCTCCCACAACAATCGGGTCCAGGGGTCTATGAGCTTGGAATTGCTGTGTCGGGTAGCCGTGAAATTTACAAGCTTGTCCCTGACTGCATAGTGGTGGTTTACCTTGGACAAGCTGACAATGTGAGAGCACGACTCCAGCGTTATGGCAGAACTGGGGCTCATTTGGACAATGCCTGTTCCGATTATTCTTCTCTCCAGAAGGGGCGCCACTTGTTTCATGAAGTCTTTTCACAAGGATTCTCAATCGTTTATAGATGGGCTCCTATGCAAAACAAGGAAGATGCCCTGCTAACAGAAGCTCAGCTGCTCAGAACATTTGATTATGCATGGAACACAAGCAATAATGCTATCCGGAGGCCTGATGATATTCTTCAAAAGCTCCACCAAATTGCGTCAGGCACTAGAACACTTTCGGATGTGGCCAGAGCGCTTCTTCCTTTCACTCAGAAGCAAGTGGGTATCCGAATTAAATCAATCAAGCTACCTCTGGCTGATGACAAATTAGATGAAGCAGACAATGGCAGCTATAATTTCCTATCTCGACTATTCAGCTTTAACAGATCACGTCCTAGGTTAGTTCAAGATATCACTGGCGTCATTCAGGAACAGGAGAATGCTAACATTTGTGGAGTGGCACTGGGTGATGGTTCAATTTGTAGAAGGCCACCAGCTGAAAAAAGAATGAGGTGTCCTGAACACAAAGGAATGAGAACAAATGTGTCCACTGCCAAAGCAATCAGGGCACCCAAGTCAGAGAGCAATGTGGTATTAGAACCCAATGTGCATTGTCAAACAAAGGGCAATGGATACAGAGACCAAAATGTCAGCCATGATTTAGAAGACCCTCCACAAACACTTGTTGGGAGTCCTGTTGATGAAAGTCTCACAAACACCGATATATGTGGAATCATCTTAAATGATGGCTCCACCTGTAGAAGGCAACCAGTTAAAGGAAGAAAAAGGTGCCATGAGCACAAAGGGAGGAGAATTCGTGCATCTATTCAAACAAAGGGCAATGGATACAGATACCAAAATGTCAGCCATGATGTAGAAGACCCTCCACAAACACTTGTTGGGAGTCCTGTTGATGAGAGTATCACAAACACCAATATATGTGGAATCATCTTAAATGATGGCTCCACTTGTAGAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCATGAGCACAAAGGGAGGAGAATTCGTGCATCTTTTCATATAAATCAGAAATAA 1389 0.4435 MVELAISRLKREQCNRTKHDSSFSHWKILIGPSDWEDHSKGKEGCARYRIHNLPQQSGPGVYELGIAVSGSREIYKLVPDCIVVVYLGQADNVRARLQRYGRTGAHLDNACSDYSSLQKGRHLFHEVFSQGFSIVYRWAPMQNKEDALLTEAQLLRTFDYAWNTSNNAIRRPDDILQKLHQIASGTRTLSDVARALLPFTQKQVGIRIKSIKLPLADDKLDEADNGSYNFLSRLFSFNRSRPRLVQDITGVIQEQENANICGVALGDGSICRRPPAEKRMRCPEHKGMRTNVSTAKAIRAPKSESNVVLEPNVHCQTKGNGYRDQNVSHDLEDPPQTLVGSPVDESLTNTDICGIILNDGSTCRRQPVKGRKRCHEHKGRRIRASIQTKGNGYRYQNVSHDVEDPPQTLVGSPVDESITNTNICGIILNDGSTCRRQPVKGRKRCHEHKGRRIRASFHINQK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03249 462 SMART uri_9 68 168 IPR000305 -
Pumo6g03249 462 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 5 308 IPR038909 GO:0003677|GO:0006355
Pumo6g03249 462 Pfam GIY-YIG domain-containing protein 23 176 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03249 343 461 HRT Transcription Factor Family AT5G56780 40.984 4.45e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Pumo6g03249 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03249 - - gmx:100784450 669.463