Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03232 ATGGCAAGTTCGATTGGGTGCATACTGTTGCTGACACTTTCTGTTAATGTCCTCGTAGCTTTAGTTCATGCACAGCAAAAAATAGGCTTCATAAGCATTGATTGCGGCGGTACTCCACCAAATGATCAGTACACAGATGATACAACTAAAATACAGTACACCACTGATCGAGCCTATATACAAACTGGGGTTAACAAGAACGTCTCCCCTGAGTATGACCCAAACAAGCTCAATCTGCCACAACCACTCTCAGATCTCAGAAGTTTTCCTCAGGGAGAAAGGAACTGTTACAGGTTAGTAGCTGGAGAAAGAGGCAATTTACATTTGATAAGGGCCTCCTTCTTGTATGGAAACTACGATGGACAAAACAAGCCACCAGAGTTTGATCTCTATGTTGATGTCAATTTCTGGTCAACAGTCAAATTTAGAAATGCCTCGGAGCAAGTTACAAAGGAAATTATTAGTGTGGCACAATCAGGGGTCACACATGTTTGCCTCTTCAACAAGGGAGCAGGAACTCCTTTTATCTCAGGATTGGAACTTAGACCACTTAATAGTTCTATTTATAACACTGAGTTTGGGGAATCTGCTTCACTGTCACTTTTCAAACGATGGGACATTGGGTCACTCAATGGAAGTGGTAGATATGAGGATGATATTTATGATAGAATTTGGTCGCCCTTCAATTCTTCATCCTGGGAATCTGTCAGCACTTCCACACCAATAAATGTCAATGATGATGGCTATAGAGCACCATTTGAAGTCATTAGAACTGCTGCTAGACCAAGGAATGGCAGTGATACTTTGGAATTTTCCTGGACCCCAGATGATCCAAGTTGGAAATTTTATGTCTACTTGTACTTTGCTGAAGTGGAACAGCTTGAGAAAACCCAACTGAGGAAATTCAATATATCTTGGAATGGATCTCCATTGTTTGATGATTCCCTAGTACCGCGCCACTTGTTTGCAACCACTCTTTCTAATTCAAAATCCCTGGTGGCAAATGAACATAGGATTTCTATCCACAAAACAAAAGATTCAACCCTTCCACCCATTCTTAATGCAGTTGAGATTTATGTAGTCAGACAGCTAGATGCACTTGCAACATTTGAACAAGATGTTGATGCTATGTTGGCCATAAAGGAAAGCTATAGAATTGAAAGAAATTGGGTGGGTGATCCATGCGAGCCAAAGAACTACTCTTGGGAAGGCTTAAATTGTAACTATAGCACTTCACTTCCTCCACGAATTATATCTCTGAATATGAGCTCAAGCAGTTTGAGTGGAATAATAACTTCTGCCATTTCCAATCTCTCCTCGTTGGAATCTTTGGACTTACATAACAACAGCTTAACTGGAGCAATACCTCAGTTTTTGGAAGAATTGAAATCCCTTAAATATTTGGATTTAAAGGGCAATCTATTTTCAGGTTCCGTTCCTACCACTCTTTTACAAAGATCAAGGGCTGGATTACTCACATTAAGGGTGGATGATCAAAATCTTGGTGGCTCAGGAGGGAACAATAAAACCAAGAAAATTGTTATTCCCATAGTGGTATTAGTATCAGTTTTAGTTCTATTGGCTGTTTTCATTCTCTTTTGGAAACTTAGAAGAAATGAACGATCAGACGAGGAGATTAGTATGCTTAACAAAGGAGGAAAAACCGTAACAACAAAGAACTGGCAATACACGTATTCGGAAGTATTGGACATCACCAACAACTTTGAAATGGCAATTGGTAAGGGAGGATTTGGAACTGTGTACTGTGGGCAGATGAAAGATGGCAAACAAGTTGCAGTCAAGATGCTTTCTCCATCATCATCTCAGGGGCCAAAGGAGTTTCAGACTGAGGCTGAGCTTTTGATGACAGTTCATCACAAAAATTTGGTATCCTTCGTTGGTTATTGTGATGATGATAACAAGATGGCACTCATATATGAGTACATGGCAAATGGCAGCTTGAAAGATTTTCTCTTGCACTCAGATGGAAATTCACATTGCTTGAGTTGGGAAAGGAGAATACAGATAGCAATCGATGCTGCAGAGGGGTTGGATTACCTACACCATGGATGCAAGCCACCTATAATACACAGGGATGTAAAGTCAGCCAACATTCTTTTAAGTCAAGACTTGGAAGCTAAGATAGCAGATTTTGGCCTCTCCAGGGAGTTTAGGAAAGATAATAAAAATCAAGAATCTCAAGTGATTCATGATGATGCTACTACAAATGAAAAATCTGCAGTAATGGGCACAACAGGGTACCTTGACCCAGAGTACTACAAATTAGGGACCTTGAATGAGAAAAGTGACATCTATAGCTTTGGAATTGTTCTACTGGAATTACTCACAGGTCGCCCTGCAATATTAAAAGGCAACCGAATAATGCACATACTTGAGTGGATAAGGCCTGAGCTTGAAAGAGGAGATTTCAGTAAAATTTTAGATCCAAGGCTCCAAGGAAAATTTGATGCTAGTTCTGGGTGGAAAGCTTTAGGAATAGCAATAGCATGCTGTGCATCAACCTCCATTCAGAGACCTACAATGAGTGTTGTGATAGCAGAGCTAAAACAGTGCTTGAAATTGGAATCCCCTACTGATACTGAGATATTTGTGGCCCCTCCAAAACAACTCTACAGCGAATTTCACAGTTCATCTGAAGCATTTTCTTATGATAGTGAATCTATCACCTATCCTTTCCCAAGATAG 2706 0.4017 MASSIGCILLLTLSVNVLVALVHAQQKIGFISIDCGGTPPNDQYTDDTTKIQYTTDRAYIQTGVNKNVSPEYDPNKLNLPQPLSDLRSFPQGERNCYRLVAGERGNLHLIRASFLYGNYDGQNKPPEFDLYVDVNFWSTVKFRNASEQVTKEIISVAQSGVTHVCLFNKGAGTPFISGLELRPLNSSIYNTEFGESASLSLFKRWDIGSLNGSGRYEDDIYDRIWSPFNSSSWESVSTSTPINVNDDGYRAPFEVIRTAARPRNGSDTLEFSWTPDDPSWKFYVYLYFAEVEQLEKTQLRKFNISWNGSPLFDDSLVPRHLFATTLSNSKSLVANEHRISIHKTKDSTLPPILNAVEIYVVRQLDALATFEQDVDAMLAIKESYRIERNWVGDPCEPKNYSWEGLNCNYSTSLPPRIISLNMSSSSLSGIITSAISNLSSLESLDLHNNSLTGAIPQFLEELKSLKYLDLKGNLFSGSVPTTLLQRSRAGLLTLRVDDQNLGGSGGNNKTKKIVIPIVVLVSVLVLLAVFILFWKLRRNERSDEEISMLNKGGKTVTTKNWQYTYSEVLDITNNFEMAIGKGGFGTVYCGQMKDGKQVAVKMLSPSSSQGPKEFQTEAELLMTVHHKNLVSFVGYCDDDNKMALIYEYMANGSLKDFLLHSDGNSHCLSWERRIQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSQDLEAKIADFGLSREFRKDNKNQESQVIHDDATTNEKSAVMGTTGYLDPEYYKLGTLNEKSDIYSFGIVLLELLTGRPAILKGNRIMHILEWIRPELERGDFSKILDPRLQGKFDASSGWKALGIAIACCASTSIQRPTMSVVIAELKQCLKLESPTDTEIFVAPPKQLYSEFHSSSEAFSYDSESITYPFPR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03232 901 FunFam Leucine-rich repeat receptor-like kinase 372 503 - -
Pumo6g03232 901 Pfam Malectin-like domain 33 360 IPR024788 -
Pumo6g03232 901 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 649 868 - -
Pumo6g03232 901 CDD STKc_IRAK 579 857 - -
Pumo6g03232 901 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Pumo6g03232 901 SUPERFAMILY L domain-like 388 501 - -
Pumo6g03232 901 Pfam Leucine rich repeat 419 474 IPR001611 GO:0005515
Pumo6g03232 901 Gene3D Transferase(Phosphotransferase) domain 1 650 870 - -
Pumo6g03232 901 Gene3D Phosphorylase Kinase; domain 1 579 649 - -
Pumo6g03232 901 SUPERFAMILY Protein kinase-like (PK-like) 558 855 IPR011009 -
Pumo6g03232 901 PANTHER OS07G0107800 PROTEIN-RELATED 31 862 - -
Pumo6g03232 901 SMART serkin_6 573 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03232 901 FunFam Leucine-rich repeat receptor-like protein kinase 551 648 - -
Pumo6g03232 901 Pfam Protein tyrosine and serine/threonine kinase 576 852 IPR001245 GO:0004672|GO:0006468
Pumo6g03232 901 Gene3D Ribonuclease Inhibitor 364 490 IPR032675 -
Pumo6g03232 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Pumo6g03232 901 ProSiteProfiles Protein kinase domain profile. 573 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03232 Pumo-Chr6 75334101 75340010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03232 8 862 Receptor kinase-like Gene Family AT4G29180 51.606 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pumo6g03232 Malectin_like 1.3e-109 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03232 - - gmx:100793137 1605.88