Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03230 ATGAACGTGTATACCATAATATGCAATGCTTTTGCCTTCAGGTGGTCCCTTATAGCAGCTCAACTGCCCGGGAGAACAGACAATGATGTGAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTCTTGGCAGCAGGAAACACTAGTGTTGCCACAAGCAACAATGGCACTTTCAGCAATACTAGTTATTCTGATCAATTCTCATCTTTTACTCTTCAACCTCATCAAGTTGTCTTGGATCAAAGACTGAACTCAGCTTGGTTTGACTACTCCTACAATGTTTTGGAATTGGAACAAACACCAATTCCAGTTCCTTTTCCAATGCCTCAGGAATTAGAAGCTTTTAATACTGGGAGCAGTTGTAGTGCACTACCACCACCCTCTAGGGAAGTTTCAATGCTTTCCAATGCAGCTTCCTTAGCACAGCAGAACAAACATACACTATGGTTTGGTTATGACAATGCAAGTGAAGATGATCCAAATTTGCTTGAGTTTGTGGTTGATGATCTGCTGAATCATGGATTTGTTTCTCAAGACAAAAGCTGCAGCCAAGTTGGTCCACCATCTGGCTAA 573 0.4136 MNVYTIICNAFAFRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAAGNTSVATSNNGTFSNTSYSDQFSSFTLQPHQVVLDQRLNSAWFDYSYNVLELEQTPIPVPFPMPQELEAFNTGSSCSALPPPSREVSMLSNAASLAQQNKHTLWFGYDNASEDDPNLLEFVVDDLLNHGFVSQDKSCSQVGPPSG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03230 190 CDD SANT 14 38 IPR001005 -
Pumo6g03230 190 Pfam Myb-like DNA-binding domain 14 36 IPR001005 -
Pumo6g03230 190 SUPERFAMILY Homeodomain-like 13 43 IPR009057 -
Pumo6g03230 190 PANTHER OS09G0431300 PROTEIN 7 91 - -
Pumo6g03230 190 Gene3D - 5 63 - -
Pumo6g03230 190 ProSiteProfiles Myb-like domain profile. 14 38 IPR001005 -
Pumo6g03230 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 42 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03230 Pumo-Chr6 75327770 75328342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03230 6 43 MYB Transcription Factor Family AT5G65790 70.732 9.70e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo6g03230 Myb_DNA-binding 4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03230 K09422 - gmx:778160 256.914