Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03229 ATGGGAAGGGCTCCATGCTGTGACAAATCTAACGTGAAAAGAGGACCTTGGTCTCCTGATGAAGATGCCACCCTCAAAAACTACCTTGAGAAACATGGCACAGGTGGTAACTGGATAGCTCTCCCCAAAAAAGCAGGCCTTAAGCGATGTGGGAAGAGCTGTCGTCTAAGATGGCTGAACTATCTCAGGCCTCATATAAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATTATCTGCACCCTTTATGGCACCATCGGAAGCAGGCAAGTCCATTATTAA 282 0.4645 MGRAPCCDKSNVKRGPWSPDEDATLKNYLEKHGTGGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTLYGTIGSRQVHY 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03229 93 SUPERFAMILY Homeodomain-like 15 90 IPR009057 -
Pumo6g03229 93 PANTHER OS09G0431300 PROTEIN 1 89 - -
Pumo6g03229 93 CDD SANT 16 62 IPR001005 -
Pumo6g03229 93 Gene3D - 6 68 - -
Pumo6g03229 93 FunFam Transcription factor RAX3 7 68 - -
Pumo6g03229 93 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pumo6g03229 93 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo6g03229 93 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo6g03229 93 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03229 Pumo-Chr6 75327182 75327759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03229 1 89 MYB Transcription Factor Family AT3G49690 80.899 1.19e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo6g03229 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03229 K09422 - gmx:778160 195.282