Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03228 ATGATGCTGGGAGAGCACCATCGCGAGAATCCAACGGTCCACGTGCCACCGTGGCCAAGCCAGGACGATCCAACGGCCGAGATGTACTCCGCGTTTTTAACAAACGACGTGAATGCTGGTGAGTACTCTCCGTATTGTTTCCAAGAAGCACTAACGGCGCTGCAGCGTTACCTGCCGTCAAACGAAACGGACGCTGACTCGGACTCGGAGGCTCAACCCGACGCGCCGGTGGACGCGTACTCCTGCGACCACTTCCGCATGTACGAGTTCAAGGTCCGTCGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCGCGGAAGTTCCACTACTCCGGCGCGGCTTGCCCGGAGTTTCGCAAGGGGAACTGCAAGAAAGGCGACACGTGCGAGTTCGCTCACGGCGTCTTCGAGTGCTGGCTCCACCCGGCGCGCTACCGGACTCAGCCCTGCAAGGATGGCACGAGTTGCCGGCGGCGCGTGTGCTTTTTTGCTCACACGCCGGAGCAGCTGCGCCTCTTGCCGATGCAGAGTCCGCGTAGCGCGGCGAACTCGGCGGAGTCCTACGACGGGTCTCCGATGAGGCAGGTTTCGATGTCGCCCGCGGCGTTCATGTCTTCTCCGGCGGCTTCTCTGTCTCCGCCGGAGTCGCCGCCGGTGTCGCCGTCGATCAACGAGATGGTGGCTTCTCTGCGTAATTTGCAGCTTGGGAAAATGAAATCGATGCCTCATAACAGAAACGTTTCGGTGGGGTCACCGGGTTACGGGTCCCCGAGAGGATCGGTGCTCCGACCCGGGTTCTGTAGTCTTCCCACTACCCCAACTCAGCAACCGGTTCGGTCTGGGGTGAACTATTTTGATGTTTGGGATCAGAGTTGTGAGGAGGAACCGGTTATGGAGAGGGTGGAGTCTGGGAGGGGAATAAGGGCTAAGATGTTTGAGAAGCTGAGCAAGGAGAATTCCCTTGACGGGTCGGGTTCGGGTCAAGGAAGTGGGGCTCCGGATGTTGGTTGGGTTTCGGAGCTGGTAAAGTGA 1077 0.6017 MMLGEHHRENPTVHVPPWPSQDDPTAEMYSAFLTNDVNAGEYSPYCFQEALTALQRYLPSNETDADSDSEAQPDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRKGNCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLLPMQSPRSAANSAESYDGSPMRQVSMSPAAFMSSPAASLSPPESPPVSPSINEMVASLRNLQLGKMKSMPHNRNVSVGSPGYGSPRGSVLRPGFCSLPTTPTQQPVRSGVNYFDVWDQSCEEEPVMERVESGRGIRAKMFEKLSKENSLDGSGSGQGSGAPDVGWVSELVK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03228 358 MobiDBLite consensus disorder prediction 1 21 - -
Pumo6g03228 358 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Pumo6g03228 358 MobiDBLite consensus disorder prediction 333 358 - -
Pumo6g03228 358 MobiDBLite consensus disorder prediction 190 209 - -
Pumo6g03228 358 MobiDBLite consensus disorder prediction 191 209 - -
Pumo6g03228 358 Gene3D - 121 194 - -
Pumo6g03228 358 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Pumo6g03228 358 PANTHER UNKEMPT FAMILY MEMBER 47 358 IPR045234 -
Pumo6g03228 358 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Pumo6g03228 358 SMART c3hfinal6 124 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03228 Pumo-Chr6 75308086 75309570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03228 73 262 C2H2 Transcription Factor Family AT5G12850 49.533 7.74e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo6g03228 zf-CCCH 4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03228 - - gmx:100778184 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03228 6 75308086 75309570 Pumo6g03228 6 75308086 75309570 ECH