Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03222 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCCTGCCGGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTAATAGAACATCTTGAAGCAAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGAATTTGTTATACCCATCCGGAGAAACTTCCAGGAGTAACAAGAGATGGGTTGAGCAGGCACTTCTTCCATAGACCTTCAAAGGCTTACACAACTGGAACAAGAAAGAGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAAGGTTGCAAGAAAATTCTAGTCCTCTACACCAACTTTGGAAAGAACAGAAAACCGGAGAAAACCAACTGGGTGATGCACCAATACCATCTGGGGCAGCATGAGGAAGAGAGAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTACCAGACACAGCCAAGGCAGTGCAACTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTGGTAGAAGGGACAGTGGAAGTGGAAGTTGTTCTTCTAAAGAAATTGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGTGTCCCTCCAATGACAAGTTTCATGACTCATCATCCCTTGGATATCCAACAGCTAAAACCTGATCACTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTAGTGCAAGCATCAGGTTCATGTGAAGAAGTGCATGAACGGCAGCGATCACAGCATGTAGCTCATCATCATCATCAACAGCATGCTCATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCGTCACATCCCATCTCTACCATTATCTCTCCTCCTCCGCTCCACCACACTTCCATCATTCTCGACGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAGTTTCCAGCAACAGCAGCAACAACATCATAAGCTTGGAGGAAGATCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAATCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAA 1341 0.4512 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEREGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSGRRDSGSGSCSSKEIVTHRDEMSAVVGVPPMTSFMTHHPLDIQQLKPDHFSFIPFRKSFDEVGIGEASTAREVVQASGSCEEVHERQRSQHVAHHHHQQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNESFQQQQQQHHKLGGRSASGLEELIMGCTSTEIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03222 446 MobiDBLite consensus disorder prediction 215 249 - -
Pumo6g03222 446 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Pumo6g03222 446 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Pumo6g03222 446 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Pumo6g03222 446 MobiDBLite consensus disorder prediction 215 246 - -
Pumo6g03222 446 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Pumo6g03222 446 MobiDBLite consensus disorder prediction 314 339 - -
Pumo6g03222 446 FunFam NAC domain-containing protein 73 56 212 - -
Pumo6g03222 446 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 335 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03222 Pumo-Chr6 75153431 75158454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03222 11 443 NAC Transcription Factor Family AT5G56620 55.022 9.82e-144 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g03222 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03222 - - gmx:100795246 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03222 6 75153431 75158454 Pumo6g03222 6 75153431 75158454 ECH