Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03221 ATGGATAATAGCTGCATTCTGGCTTTTCTCCTCCTCATTCTCCACTCAAGTACAACAAAAGCTGCCTTCAGTGTTGGTGGTGGAGTTGGTGTAGGTGTAGGAGTTGGTGTTGGTGTTGGCAATGGAAATGGTGGTGGTGGTAGTGGTGGAGGGGTTTGGGTTGGAGGAGGGATTAACAGCCCAGAGCCTCCTGGATCTTCAGTGCCAAATCTTGAAGGAGCTTACACAGCACTTCAGGCATGGAAATCTGCAATCACTGAGGACCCTCTTAAGATTTTATCAAGTTGGGTTGGTCCTAATGTGTGTGCTTACAAAGGAGTCTTCTGTGCAAACCCTCAAGATGAAATGGTTGCATCAGCATTCCCAGTTGTAGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAACTCTTGTCAAGGAGCTCTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACAGTAACAGGTTCATTGGCACTGTTCCTGATACATTCAGAGACCTGGTGTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTGCTGCTACTTTGTACATGCCAGGCCTCATCTACTTGGACCTCAGATTCAACTACTTCTCTGGGCCCCTCCCTCAGGAACTTTTCAGCAAGAATCTGGATGCAATATTCCTCAACAACAACCAATTTGAAGGTGAAATTCCTCAAAACTTGGGCAGTTCCCCAGCCTCAGTGATAAACTTAGCCAACAACAAGTTGAGTGGAACCATCCCAGCAAGTTTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACCGGTTGCATTCCTGAGGGAGTAGGGCTATTCACAGAAATGCAAGTTCTGGATGTGAGCTTCAACTCGCTCATGGGTCATTTGCCAGACACACTATCATGCCTGCAAGACATAGAAGTTCTCAATTTGGCTCATAACAAGCTTTCTGGGGAGTTATCAGATATAGTCTGCTCTTTGAGAAGCCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCTGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCACTAAACTGCATTCCTGATCGGGGCATGCAGAGACCTCCACCTGAGTGCTCTGCAATCCCAGGTGGTAGCCTTAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTAGTTCAATGGCTGTAACTAAGTCTAAGCACATTGATCCCACTTCACCATCATCTCCTTGA 1278 0.4577 MDNSCILAFLLLILHSSTTKAAFSVGGGVGVGVGVGVGVGNGNGGGGSGGGVWVGGGINSPEPPGSSVPNLEGAYTALQAWKSAITEDPLKILSSWVGPNVCAYKGVFCANPQDEMVASAFPVVAGIDLNHANLKGTLVKELSLLSDLSLLHLNSNRFIGTVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGPLPQELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGTIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDIVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPDRGMQRPPPECSAIPGGSLSCLRIPTPRPLVCSSMAVTKSKHIDPTSPSSP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03221 425 Pfam Leucine rich repeat N-terminal domain 75 109 IPR013210 -
Pumo6g03221 425 Gene3D Ribonuclease Inhibitor 240 363 IPR032675 -
Pumo6g03221 425 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515
Pumo6g03221 425 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 61 408 - -
Pumo6g03221 425 PRINTS Leucine-rich repeat signature 312 325 - -
Pumo6g03221 425 PRINTS Leucine-rich repeat signature 172 185 - -
Pumo6g03221 425 FunFam Leucine-rich repeat extensin-like protein 1 75 239 - -
Pumo6g03221 425 Gene3D Ribonuclease Inhibitor 74 239 IPR032675 -
Pumo6g03221 425 SUPERFAMILY L domain-like 74 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03221 Pumo-Chr6 75145061 75146499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03221 69 397 Leucine-rich Repeat extension Gene Families AT3G24480 50.149 2.65e-105 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03221 - - gmx:100775544 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03221 6 75145061 75146499 Pumo6g03221 6 75145061 75146499 ECH