Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03204 ATGGGGAACAAAATCGCGCGCACGACGCAGGTATCGGCTTCGGAGTACTACCTGCACGACCTGCCGTCGACGTACAATCTGGTTCTGAAGGAGGTGTTAGGTCGCGGGCGTTTCTTCAAGTCCATTCAGTGCAAACACGACGAGGGTTTGGTCCTCGTCAAGGTCTATTTCAAGCGCGGCGATTTCCTCGATCTCTCTGACTATGAACGCCGTCTCTCTCAGATCAAACACATCTTCACCTCCATCGAACACCCTCACGTCTGGCCTTTTCAGTTTTGGCAAGAAACCGATAAAGCAGCATACCTTTTGAGGCAGTATTTCTTCCATAATCTGCATGATAGGTTAAGCACGCGCCCTTTTCTTAGTCTCATTGAGAAGAAATGGTTGGCTTTTCAGTTGCTTGTAGCTGTAAAACAGTGCCACGAGAACGGAGTGTGTCATGGTGATATCAAGTGTGAGAATGTGCTGATTACGTCCTCCAATTGGCTTTACCTTGCTGACTTTGCATCTTTCAAACCCACTTACATTCCATATGATGACCCCTCCGATTTCTCTTTTTTCTTTGACACTGGTGGACGAAGACTCTGTTATCTTGCACCTGAGAGATTTTATGAACACGGAGGGGAGATGCAGGTGGCACAAGATACCCCCTTAAAACCCTATATGGATATATTTGCTGTCGGGTGTGTAATTGCTGAACTTTTCCTTGAGGGGCAGCCACTATTTGAACTGTCTCAGCTTCTTGCTTATCGCAGAGGGCAATATGATCCAAGTCAACATCTTGAAAAAATACCAGATCATGGAATCCGTAAGATGATATTGCACATGATTCAGTTAGAACCAGAGTCTCGATTTTCTGCCGAAAGATATCTAAAGGAATATGCTGCAGTCGTATTTCCGATCTATTTTTCACCATTTCTGCATGATTTTTACCGATGCTGGAGTCCTCTTCATTCTGATATGAGGGTTTTACTATGCCAAAGTGCTTTTCCGGAGATACTTAAACAAATGATGAACAATAAGTCGTCTGATGATGCAGGTGTTAATTCCAGCGAACTTTTGGAAGAGATGGTTGCTAAAGAAAGTGTGAGTTTCATGAAGGATTCACTGATGAAGAGAGAGGACATAGGCAAAGGCTTAGTCCATGATCACTATGAACTTCTTGGTGATATTAATAGCCTACTAAGGGATGCTAAAAAAAATAATAATCCATCGCATGTAGCAGGAAATGCACATAATTCTACCTTTCCTGAAAATCTAAAAAATTTGCAAACTGGTAAACTGCTTCAAACTATCTCCAATGCATTTCGAGGAAATGACCATCCCTTTCTGAAAAGTATTACTATGAATGATTTAAATTCATTGATGTCTGAGTATGATAGTCAATCTGATACATTTGGAATGCCTTTTCTACCATTACCAAAGGATAGTATGAGATGTGAAGGCATGGTTTTGATAACTTCTTTGCTATGCTCTTGCATACGCAATGTCAGGTTGCCTCACTTGAGGAGGGCAGCTGTACTCTTGTTGAAGGCTTCTGCCCTATATATTGATGATGAGGATCGTTTGCAGCGTGTTATCCCTTATGTCATTGTGATGCTTTCAGATTCAGCAGCAATTGTGCGTTGTGCTGCTTTGGAGACTTTGTGTGACATTCTTCCCTTAGTGCGGGATTTTCCTCCCAGTGATGCAAAGATATTTCCTGAGTATATTCTTCCAATGCTCTCTATGCTTCCTGATGATCCAGAGGAAAGTGTGAGGATATGCTACGCCAGCAATATAGCTAAGCTGGCACTGACTGCTTATGGATTCCTGATACGCTCAATAAGCTTGAGTGAGGCAGGTGTCCTTGATGAATTGAGTTCGCCACAGAAGCCATTGACATCATCCACTCAGACCTCTGGAAGAATGAAGAGGATAAATGGCGATGTCCAACTTCTGCAGCTGAGGAAATCCATTGCAGGAGGTTGTCCAAGAACTTGTAATGGGTCCTAA 1995 0.4291 MGNKIARTTQVSASEYYLHDLPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRGDFLDLSDYERRLSQIKHIFTSIEHPHVWPFQFWQETDKAAYLLRQYFFHNLHDRLSTRPFLSLIEKKWLAFQLLVAVKQCHENGVCHGDIKCENVLITSSNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAPERFYEHGGEMQVAQDTPLKPYMDIFAVGCVIAELFLEGQPLFELSQLLAYRRGQYDPSQHLEKIPDHGIRKMILHMIQLEPESRFSAERYLKEYAAVVFPIYFSPFLHDFYRCWSPLHSDMRVLLCQSAFPEILKQMMNNKSSDDAGVNSSELLEEMVAKESVSFMKDSLMKREDIGKGLVHDHYELLGDINSLLRDAKKNNNPSHVAGNAHNSTFPENLKNLQTGKLLQTISNAFRGNDHPFLKSITMNDLNSLMSEYDSQSDTFGMPFLPLPKDSMRCEGMVLITSLLCSCIRNVRLPHLRRAAVLLLKASALYIDDEDRLQRVIPYVIVMLSDSAAIVRCAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLIRSISLSEAGVLDELSSPQKPLTSSTQTSGRMKRINGDVQLLQLRKSIAGGCPRTCNGS 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03204 664 Pfam Protein kinase domain 29 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03204 664 CDD STKc_Vps15 16 303 - -
Pumo6g03204 664 SUPERFAMILY Protein kinase-like (PK-like) 26 322 IPR011009 -
Pumo6g03204 664 Pfam HEAT repeat 526 554 IPR000357 GO:0005515
Pumo6g03204 664 Gene3D - 474 612 IPR011989 -
Pumo6g03204 664 PANTHER PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 1 653 IPR045162 GO:0004674|GO:0016236|GO:0045324
Pumo6g03204 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Pumo6g03204 664 Gene3D Transferase(Phosphotransferase) domain 1 22 305 - -
Pumo6g03204 664 ProSiteProfiles Protein kinase domain profile. 27 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03204 664 SMART serkin_6 27 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03204 664 FunFam phosphoinositide 3-kinase regulatory subunit 4-like 472 611 - -
Pumo6g03204 664 FunFam Protein kinase family protein / WD-40 repeat family protein 24 347 - -
Pumo6g03204 664 SUPERFAMILY ARM repeat 281 607 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03204 Pumo-Chr6 74878635 74882210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03204 23 252 AGC Kinase Gene Family AT5G04510 22.363 7.82e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_Pl-Tthe Pumo6g03204 Pkinase 5.1e-23 CL0016