Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03199 ATGTCCAACTTGCATTACATGTTCATCTTGTTAGCAGTTCTTGTTCTTCTTCTGCAAAATCCCAGTAGAATACATTGCCATACCAAGGGAATTAGACCAAGACGTTCTGCAGGTAAAGGGTTATCGACCAACATGACTAGAGTGCAGTATTCTGAACAGCAATTCATGAAATGGGTGAATTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGCAGCTAAAAATAAGCTTGTGGCTTCTTACACTTTGCACGTTGATAAGGATCCTGGTGCTGCAGATTTTACCTCCCTTCAAGAAGCCATTGATTCCCTTCCATTCATCAATCTTGTGAGAGTGGTCATAAAAGTCCATGCAGGGGTCTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTACATAACAATAGAAGGAGCTGGTGCAGATAAAACCATTGTTAAATGGGGTGACACTGCTCAAACACCTGGCCCAAATGGGAGGCCACTAGGAACCTATGGTTCAGCAACTTTTTCGGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAGTTGGAAAGCAAGCGGTGGCATTAAGGATTTCAGCAGACACAGCAGCATTTGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTTTATGATCATGTGGGCAGACATTACTATAAGGATTGTTACATTGAAGGCTCTGTTGATTTCATATTTGGCAACTCTCTCTCACTATTTGAGGGATGTCACGTTCATGCGATAGCACAGAACACAGGGGCCGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACGGGGTTCTCATTTGTGAACTGTAAGGTCACGGGGTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTGGTCTTTGCTTACACATATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGATCCTAACCGTGAAATGACTGTATTCTATGGGCAGTACAAATGCACAGGACTTGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGACGAGGAAGCTACACCTTTTCTATCACTTAGCTTTATTGATGGAACCGAATGGATCCAAGTGTAG 1146 0.4398 MSNLHYMFILLAVLVLLLQNPSRIHCHTKGIRPRRSAGKGLSTNMTRVQYSEQQFMKWVNFVGSLKHSVFKAAKNKLVASYTLHVDKDPGAADFTSLQEAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSYITIEGAGADKTIVKWGDTAQTPGPNGRPLGTYGSATFSVNSPYFIAKNITFQNTTPVPAPGAVGKQAVALRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQNTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGLGASFAGRVSWSRELTDEEATPFLSLSFIDGTEWIQV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03199 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Pumo6g03199 381 SUPERFAMILY Pectin lyase-like 78 380 IPR011050 -
Pumo6g03199 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 380 - -
Pumo6g03199 381 Gene3D - 78 381 IPR012334 -
Pumo6g03199 381 Pfam Pectinesterase 90 375 IPR000070 GO:0030599|GO:0042545
Pumo6g03199 381 FunFam Pectinesterase 79 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03199 Pumo-Chr6 74854888 74858415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03199 2 379 Carbohydrate Esterase AT5G47500 44.063 1.19e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03199 K01051 - gmx:100793314 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03199 6 74854888 74858415 Pumo6g03199 6 74854888 74858415 ECH