Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03193 ATGGAACTATTCACCGCATCATGTCTTAAATTGTTATTTCACTCTCTTGTGATCTTATTCTTCCTCTCTATCCATGCAAACTCTCAGTCTCAGTCTCAGTTGCGTGATCAAGAACTTGCAACCTTACTGAAGATAAAGGAACACCTTGAAAACCCTTCGTTCCTCAGTCACTGGACCCCATCAAGCTCCTCTCACTGCTTATGGCCAGAGATAAAATGCACCGATGGCTCAGTCACTGGATTGACCTTGTCCAACAGCAGCATCACTCAAACCATACCCCCTTTCATATGTGACCTCAAAAACCTCACACATGTTGATTTCTACAACAATTACATTCCCGGGGAGTTCCCAACATATCTCTACAATTGCTCCAAGTTGGAGTACCTAGATCTGTCTATGAACAACTTTGTTGGTAGCATCCCTCATGACATTGACAGCCTCTCTAATTTGCAGTATCTCAACCTTGGTTACACCAATTTCACTGGTGACATTCCTGATAGCATTGGAAGGCTAAAGGAACTCAGAAATCTTCAACTTCAAAATAGTCTATTTAATGGAACAGTCCCTGCTGAGATTGGCAACTTGTCCAATCTTGACACCTTGGACTTGTCCTCTAGCAACATGCTCCCTCCTTCGAGGTTGCACGATGACTGGACCCGGTTGAACAAGTTGAAGTTCTTTTTTATGTTTGAGTCCAACTTGGTTGGGGAGATCCCTGAAACCATTGGAAACATGGTGGCTTTGGAGAGATTGGATCTATCGCAAAACGATTTGAGTGGACCAATTCCCAGCGGTTTGTTCATGCTGAAGAGTCTGAGTATAATGTTTCTTTCTAGAAACAATCTTTCAGGGGTAATACCTGATGTGGTTGAAGCATTGAATTTGACCATCATTGATCTCACACGGAATGGTATCTCAGGAAAAATACCAGATGGTTTTGGAAAGCTCCAAAAGTTAACCGGTTTGGCTTTGTCTCTGAATAACTTGCAAGGGGAGATACCAGAAAGCATAGGACTTCTTCCATCTCTGGTAGATTTTAAAGTATTTTCCAACAATTTATCAGGTATTCTTCCTCCTGATTTTGGTCGCTACTCAAAGCTTGAAACATTTTTGGTTTCAAATAATAGTTTTACTGGAAAGCTACCAGAGAACTTATGCTATAATGGTCAATTGCTTAATATATCTGTCTATGAAAATCATCTGAGTGGGGAGTTGCCACAATCACTTGGGAATTGTAGTAGCCTGATGGATCTGAAAATCTATAGCAATGAGTTTTCTGGTAGCATTCCTAGTGGTCTTTGGACTTTCAACTTGTCAAATTTCATGGTGAGTCATAATAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCCGCAAGTATTTCGCGCTTGGAGATAGATTACAATCAATTTTCTGGTAGAATTCCAACTGGGGTATCTTCATGGACTAATGTGATCGTGTTTAAAGCCAATAAGAACTACCTTAATGGGAGTATTCCAAAAGAATTAACAGCTCCTCCCAAGCTAACAATTCTATTGCTTGATCAGAACCAGCTCACAGGGCCACTTCCATCAGATATAATATCATGGCAGTCCCTAGTTACTCTAAATTTGAGCCAAAACCAACTCTCTGGACAAATCCCAGAGGCGATTGGTCGGTTACCTGTCCTTAGCGTACTTGACCTGTCAGAAAATCAATTCTCTGGTCAAGTTCCTTCTATACTTCCCAGACTCACCATTCTCAATCTGTCCTCCAATTATTTGACAGGGACGGTTCCAAGTGAATTTGATAATCCTGCTTATGACACCAGCTTTTTGAACAATTCTGGCCTCTGTGCTGATACCCCAGCACTGAACCTCAGGTTCTGCAATTCTAGCCCTCAAAGGCAAAGCAAGGATTCATCTTGGTCTCTTGCTTTGATCATAAGCCTGGTGGCAGTGGCCTGCTTCCTGGCTTTGTTGACATCACTCTTGATCATCAGATTTTACAGAAAAAGAAAGCAAGGATTGGATAGCTCATGGAAGCTCATTTCCTTCCAAAGGCTGAGTTTCACTGAATCAAACATAGTGTCATCACTGACAGAAAATAATATTATTGGCAGTGGCGGATATGGTGCAGTATACCGCGTTGCAGTTGATGGTTTAGGCTATGTTGCTGTGAAGAAGATTTGGGAAAACAAGAAGTTAGATAAGAATCTTGAGAGCTCATTTCATACTGAAGTTAAAATATTGAGCAACATTCGTCACAGAAACATTGTGAAGTTGATGTGCTGTATCTCTAATAAGGACTCTATGCTCCTTGTCTATGAGTATGTGGAAAACCGTAGCCTTGACAGGTGGCTGCACCGGAAGAATAAGTCATCAGCTGTGTCAGAATATGTTCAAACAACTCGAGTCAGTGAAAAGATTGATGTCTTCAGCTTTGGGGTTATCCTATTGGAACTGACAACCGGTAAAGAAGCTAATTATGGTGATGAGCACTCTTCTCTAGCAGAGTGGGCGTGGCGCCACCAGCAGTTAGGAGGCAACATAGAAGAGCTGCTAGACAAGGAAGTCATGGAAAACAGTTACTTGGATGGAATGTGTAAGGTTTTCAAACTTGGGATCATGTGTACTTCAACACTTCCTTCTAGTAGACCTTCCATGAAGGAGGTTCTACAAGTATTGCTTTCTTGTGAAGATTCATTTTCTAAAGGAGAGAGTAATATTGGCCACTATGATGATGTCCCCCTTCTTAAAAATTCAAAAAGAGAGCATAAGTTGGATATTGATAATGATAGCTAG 2781 0.4132 MELFTASCLKLLFHSLVILFFLSIHANSQSQSQLRDQELATLLKIKEHLENPSFLSHWTPSSSSHCLWPEIKCTDGSVTGLTLSNSSITQTIPPFICDLKNLTHVDFYNNYIPGEFPTYLYNCSKLEYLDLSMNNFVGSIPHDIDSLSNLQYLNLGYTNFTGDIPDSIGRLKELRNLQLQNSLFNGTVPAEIGNLSNLDTLDLSSSNMLPPSRLHDDWTRLNKLKFFFMFESNLVGEIPETIGNMVALERLDLSQNDLSGPIPSGLFMLKSLSIMFLSRNNLSGVIPDVVEALNLTIIDLTRNGISGKIPDGFGKLQKLTGLALSLNNLQGEIPESIGLLPSLVDFKVFSNNLSGILPPDFGRYSKLETFLVSNNSFTGKLPENLCYNGQLLNISVYENHLSGELPQSLGNCSSLMDLKIYSNEFSGSIPSGLWTFNLSNFMVSHNKFTGELPERLSASISRLEIDYNQFSGRIPTGVSSWTNVIVFKANKNYLNGSIPKELTAPPKLTILLLDQNQLTGPLPSDIISWQSLVTLNLSQNQLSGQIPEAIGRLPVLSVLDLSENQFSGQVPSILPRLTILNLSSNYLTGTVPSEFDNPAYDTSFLNNSGLCADTPALNLRFCNSSPQRQSKDSSWSLALIISLVAVACFLALLTSLLIIRFYRKRKQGLDSSWKLISFQRLSFTESNIVSSLTENNIIGSGGYGAVYRVAVDGLGYVAVKKIWENKKLDKNLESSFHTEVKILSNIRHRNIVKLMCCISNKDSMLLVYEYVENRSLDRWLHRKNKSSAVSEYVQTTRVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHQQLGGNIEELLDKEVMENSYLDGMCKVFKLGIMCTSTLPSSRPSMKEVLQVLLSCEDSFSKGESNIGHYDDVPLLKNSKREHKLDIDNDS 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03193 926 Gene3D Ribonuclease Inhibitor 35 181 IPR032675 -
Pumo6g03193 926 Gene3D Phosphorylase Kinase; domain 1 668 770 - -
Pumo6g03193 926 Pfam Leucine rich repeat 506 566 IPR001611 GO:0005515
Pumo6g03193 926 SUPERFAMILY Protein kinase-like (PK-like) 689 892 IPR011009 -
Pumo6g03193 926 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 191 291 - -
Pumo6g03193 926 SUPERFAMILY RNI-like 293 592 - -
Pumo6g03193 926 SMART LRR_typ_2 574 597 IPR003591 -
Pumo6g03193 926 SMART LRR_typ_2 147 171 IPR003591 -
Pumo6g03193 926 SMART LRR_typ_2 245 269 IPR003591 -
Pumo6g03193 926 SMART LRR_typ_2 316 340 IPR003591 -
Pumo6g03193 926 SMART LRR_typ_2 529 553 IPR003591 -
Pumo6g03193 926 Gene3D Transferase(Phosphotransferase) domain 1 771 899 - -
Pumo6g03193 926 Gene3D Ribonuclease Inhibitor 292 459 IPR032675 -
Pumo6g03193 926 FunFam Kinase family with leucine-rich repeat domain-containing protein 674 770 - -
Pumo6g03193 926 ProSiteProfiles Protein kinase domain profile. 692 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03193 926 Gene3D Ribonuclease Inhibitor 528 608 IPR032675 -
Pumo6g03193 926 Gene3D Ribonuclease Inhibitor 460 527 IPR032675 -
Pumo6g03193 926 Gene3D Ribonuclease Inhibitor 182 291 IPR032675 -
Pumo6g03193 926 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Pumo6g03193 926 FunFam Receptor-like protein kinase HSL1 isoform A 35 186 - -
Pumo6g03193 926 SUPERFAMILY L domain-like 45 368 - -
Pumo6g03193 926 Pfam Protein kinase domain 694 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03193 926 FunFam Receptor-like protein kinase HSL1 isoform A 299 622 - -
Pumo6g03193 926 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Pumo6g03193 926 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 790 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03193 Pumo-Chr6 74761140 74764779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03193 791 888 Receptor kinase-like Gene Family AT5G25930 60.204 1.24e-31 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo6g03193 Pkinase 5.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03193 - - gmx:100798963 1410.97