Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03192 ATGACAATACCATTTTACTATTATCTAAACTTCTTCTTACTCTTGAGCCATGTACACTCTCAGACTGAGCTGCATGTTCAAGAACATGCAGTCCTACTGAGGATAAAGCAGCACCTAAAAAACCCTTCATTCCTCAGTCACTGGACCAGATCAAACATCTCTCACTGCACTTGGCCAGAGATCACATGCACCAGTGACTCAGTCACTGGATTGACTCTGGTCAGCAGCAGCATCAATCAAACACTACCACCTTTCATGTGTGACCTCAAAAATCTCACACTTGTTAACTTCAGCAGGAATTCCATTCCCGGGGAGTTCCCAAAATTTCTCTATAAATGTTCCAAGCTGGTGTACCTCGACCTTGAAATGAACGACTTTGCTGGCAGCATTCCGGATGACATAGACAACTTGGTTAACTTGCAGCATCTTAACCTTGGCTCCACCAGCTTTAGTGGTGACATTCCTGCAAGCATTGGAAGGTTAAAGGAACTGAGAATGCTTCAACTTCACTATTGTCTATTCAATGGTACTTTCCCTTATGAAAGTATTGGCAACTTGGTCAATCTTGAATTCTTGGATATGTCCTCTAACTTGGTGCTCCCTGCTTCCAAGCTCTCACCAAGCTTGACCCGGTTGAAAAAACTCAAGTTCTTTCACATGTACAGTTGCAACCTGTTTGGGGAAATCCCTGAAACCATTGGAGAAATGGTGGCTTTGGAGAACTTGGATTTATCACGAAGCAATTTCACTGGACAAATTCCTAAAGGCTTGTTCATGCTCAAGAATTTGAGCATGCTGTACCTTTTCCGGAACAAGCTCTCTGGGGAGATACCTGGTGTGGTTGAAGCATTGAATTTGACCGCACTCGATCTTGCAGAGAACAATCTTGAGGGGAAAATACCTCATGATTTTGGGAAGCTCCAAAAGTTATTACTGTTGAGTTTGTCTCTCAATAACTTGTCAGGGGAGATACCACAAAGCATAGGCCGTATTCCATCTCTGATAGATTTTCATGTCATGTTCAATAACTTGTCAGGTATTCTTCCTCCTGATTTAGGTCGCTACTCAGAGCTTAAAACATTTTTGGTTGCAAATAATAGTTTTAGTGGAAGGCTCCCAAAGAACTTGTGCTATCATGGTCAGTTACTTAATTTATCTGCTTATGATAATCATCTGAGTGGCGAGTTGCCAGAATCACTTGGCTATTGTAGTAGCCTGGTGGATTTAAAAATTTCCAATAATGAGTTTTCTGGTAGCATTCCTAGTGGTCTTTGGACTTTCAAATTGTCAAATTTCATGGTGAGCAATAATAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCCTCAAGTATTTCACGCTTGGAGATAAGTCACAATCGGTTTTCTGGTAGGATTCCAACTGGGGTATCTTCATGGACTAATGTGGTAGTGTTTCAAGCCAGTGAGAACTACCTTAATGGGAGTATTCCAAAAGGGTTAACAGCTCTTCCCAAGCTAACAACTCTATTGCTTGATCATAACCAGCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGTGAATCTAAATTTGAGCCATAACCAACTCTCTGGACAAATCCCAGAGCCGATTGGTCGGTTACCTGTCCTTAGCCAACTTGATCTGTCAGAAAATCAATTGTCTGGTCAAGTTCCTTCTATACTTCCCAGACTCACCATTCTCAATCTATCCTCTAACCATTTAACAGGGAGGGTTCCAAGTGAATTTGAAAATTCTGTGTATTCCACCAGCTTTTTGGATAATTCTGGCCTCTGTGCTGATATTCCAGCACTGAACCTTAGGCTGTGCAATGTTGTTGGCTTTGAAAGGCCAACCAAAGGCTCTTCTTGGTCACTTACTTTGATTATGTGCCTGGTGGCAATAGCCTTGTTGCTGGCTTTGTCGATATCACTCTTGATTATCAAACTTTGCAGAAGAAGGGAACAGGGATTTGATAACTCATGGAAGCTCATTTCCTTTCAAAGGCTAAGTTTCACTGAATCAAGCATAGTGTCATCAATGACAGAACATAATGTTATTGGAAGTGGTGGATTTGGTACAGTATACCGTGTCCCGGTTGATGGTTTTGGCTATGTTGCTGTGAAAAAGATCTCCAGTAACAAAAAGTTAGACCACAAGCTAGAGAGCTCATTTCGTGCAGAAGTTAAAATATTGAGCAACATTCGTCATAATAACATTGTGAAGTTGTTGTGCTGCATCTCTAATGAGGATTCTATGCTCCTTGTCTATGAGTATTTGGAAAACAGTAGCCTAGATAGGTGGCTGCACAATAAGAGCAAATCATCAGCTGTGTCAGGTTTAGTGCATAATTTTGAACTTGATTGGCCAAAGAGATTGCAAATAGCCATTGGGGTTGCTCATGGCTTGTGCTACATGCACCATGATTGTTCCCCACCGATTGTTCATCGAGATATAAAAACAAGCAACATCCTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGCCAGGGGAACTTGCTACCATGTCATCAGTTATTGGCTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACGCGAGTCAGTGAGAAGATTGATGTATTCAGCTTTGGGGTTATACTATTGGAGCTGACAACTGGTAAAGAAGCTAACTATGGTGATGAGCACTCATCTCTTGCAGAGTGGGCGTGGCGCCACATGATTGTAGGAAGCAAAATAGAAGAGCTGCTAGACAATGATTTCATGGATCCAAGTTACAAGAATGAAATGTGCAGTGCTTTCAAACTTGGAGTCTTGTGTACTTCAAAACTTCCTGCCAATAGGCCTTCCATGAAGGAGGTGCTACACGTATTGCTCAGATGTGGAGAAGGATTTGCGTTTGGAGAAGGGAATATTAGGCAATATGATGGTGTTCCCCTTCTTAAGAATTCAAAATGGGAGAGTAGGTTGGATGCTGTTGATAATGATAGTGATAGTGACTAA 3024 0.416 MTIPFYYYLNFFLLLSHVHSQTELHVQEHAVLLRIKQHLKNPSFLSHWTRSNISHCTWPEITCTSDSVTGLTLVSSSINQTLPPFMCDLKNLTLVNFSRNSIPGEFPKFLYKCSKLVYLDLEMNDFAGSIPDDIDNLVNLQHLNLGSTSFSGDIPASIGRLKELRMLQLHYCLFNGTFPYESIGNLVNLEFLDMSSNLVLPASKLSPSLTRLKKLKFFHMYSCNLFGEIPETIGEMVALENLDLSRSNFTGQIPKGLFMLKNLSMLYLFRNKLSGEIPGVVEALNLTALDLAENNLEGKIPHDFGKLQKLLLLSLSLNNLSGEIPQSIGRIPSLIDFHVMFNNLSGILPPDLGRYSELKTFLVANNSFSGRLPKNLCYHGQLLNLSAYDNHLSGELPESLGYCSSLVDLKISNNEFSGSIPSGLWTFKLSNFMVSNNKFTGELPERLSSSISRLEISHNRFSGRIPTGVSSWTNVVVFQASENYLNGSIPKGLTALPKLTTLLLDHNQLTGPLPSDIISWKSLVNLNLSHNQLSGQIPEPIGRLPVLSQLDLSENQLSGQVPSILPRLTILNLSSNHLTGRVPSEFENSVYSTSFLDNSGLCADIPALNLRLCNVVGFERPTKGSSWSLTLIMCLVAIALLLALSISLLIIKLCRRREQGFDNSWKLISFQRLSFTESSIVSSMTEHNVIGSGGFGTVYRVPVDGFGYVAVKKISSNKKLDHKLESSFRAEVKILSNIRHNNIVKLLCCISNEDSMLLVYEYLENSSLDRWLHNKSKSSAVSGLVHNFELDWPKRLQIAIGVAHGLCYMHHDCSPPIVHRDIKTSNILLDAQFNAKVADFGLARMLMKPGELATMSSVIGSFGYMAPEYVQTTRVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHMIVGSKIEELLDNDFMDPSYKNEMCSAFKLGVLCTSKLPANRPSMKEVLHVLLRCGEGFAFGEGNIRQYDGVPLLKNSKWESRLDAVDNDSDSD 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03192 1007 Gene3D Ribonuclease Inhibitor 202 344 IPR032675 -
Pumo6g03192 1007 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 285 966 - -
Pumo6g03192 1007 FunFam Kinase family with leucine-rich repeat domain-containing protein 666 762 - -
Pumo6g03192 1007 SMART LRR_typ_2 186 212 IPR003591 -
Pumo6g03192 1007 SMART LRR_typ_2 236 260 IPR003591 -
Pumo6g03192 1007 SMART LRR_typ_2 137 161 IPR003591 -
Pumo6g03192 1007 SMART LRR_typ_2 307 331 IPR003591 -
Pumo6g03192 1007 SMART LRR_typ_2 496 520 IPR003591 -
Pumo6g03192 1007 SMART LRR_typ_2 565 588 IPR003591 -
Pumo6g03192 1007 SUPERFAMILY Protein kinase-like (PK-like) 678 965 IPR011009 -
Pumo6g03192 1007 Gene3D Transferase(Phosphotransferase) domain 1 763 972 - -
Pumo6g03192 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Pumo6g03192 1007 SMART serkin_6 684 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03192 1007 Gene3D Ribonuclease Inhibitor 25 201 IPR032675 -
Pumo6g03192 1007 FunFam Receptor-like protein kinase HSL1 isoform A 290 613 - -
Pumo6g03192 1007 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 182 282 - -
Pumo6g03192 1007 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Pumo6g03192 1007 Pfam Protein kinase domain 686 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03192 1007 PRINTS Leucine-rich repeat signature 547 560 - -
Pumo6g03192 1007 PRINTS Leucine-rich repeat signature 565 578 - -
Pumo6g03192 1007 FunFam Kinase family with leucine-rich repeat domain-containing protein 763 981 - -
Pumo6g03192 1007 Gene3D Ribonuclease Inhibitor 345 615 IPR032675 -
Pumo6g03192 1007 SUPERFAMILY L domain-like 207 596 - -
Pumo6g03192 1007 FunFam Receptor-like protein kinase HSL1 isoform A 25 176 - -
Pumo6g03192 1007 SUPERFAMILY L domain-like 27 282 - -
Pumo6g03192 1007 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Pumo6g03192 1007 ProSiteProfiles Protein kinase domain profile. 684 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03192 1007 Gene3D Phosphorylase Kinase; domain 1 662 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03192 Pumo-Chr6 74742605 74746373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03192 25 969 Receptor kinase-like Gene Family AT5G25930 49.215 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo6g03192 Pkinase 8.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03192 - - gmx:100819744 1705.26