Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03189 ATGGGCCGATCACCATGCTGTGACAAGAGTTGTGGCAAGAGCTGCAGACTAAGATGGACCAATTATCTTAGGCCTGATATTAAGAGAGGAAAGTTCAGTTTGCAAGTAGAGCAAACCATCATTCAACTCCATGCCCTTTTTGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACAGACAATGAGATCAAGAACTATTGGAACATGCATCTTAAGAAAAGGTTAGCCAAAATGGGATTTGACCTTGTGAAACACAAGCCAAAAAATGATGCACTTCTCTCTAGATAG 297 0.4242 MGRSPCCDKSCGKSCRLRWTNYLRPDIKRGKFSLQVEQTIIQLHALFGNRWSAIATHLPKRTDNEIKNYWNMHLKKRLAKMGFDLVKHKPKNDALLSR 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03189 98 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Pumo6g03189 98 FunFam MYB transcription factor 31 78 - -
Pumo6g03189 98 SMART sant 28 76 IPR001005 -
Pumo6g03189 98 SUPERFAMILY Homeodomain-like 11 83 IPR009057 -
Pumo6g03189 98 CDD SANT 37 74 IPR001005 -
Pumo6g03189 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 93 - -
Pumo6g03189 98 Gene3D - 31 78 - -
Pumo6g03189 98 Gene3D - 2 28 - -
Pumo6g03189 98 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Pumo6g03189 98 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03189 Pumo-Chr6 74711120 74712603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03189 1 97 MYB Transcription Factor Family AT5G15310 62.963 7.44e-53 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo6g03189 Myb_DNA-binding 5.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03189 K09422 - fve:101311397 174.866