Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03183 ATGGGTTCCCCCAAAAAGGATGAGACTGAGACTGAGACACAAAAGGTGGTAGAGATGGGAAGAAAAGAGAGAGCTAATTCCATAACCATCATTTTGAGATATGCTGATTGGATTGATGTTGTGCTCATGTTAATGGGTGCTGTGGGAGCAATAGGAGATGGCATGTCCACAAATGTTTTGTTGCTCTTTGCTAGCCGTATCATGAACAGCTTAGGTTACAGTAATAACCTACAAAGTACTAGCAACACTTACATGGCTGAGGTTGAAAAGTGCAGTTTATATTTTGTCTACTTGGGATTAGCTGCAATGGTGGTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGGCAGGTGCTGAGAATCCGTTACAAGTACTTGGAAGCTGTCCTAAGACAAGAAGTAGGGTTTTTCGATTTGCAGGAAGCAACCACTTCTGAAATCATTAATAGCATATCAAAGGACACTTCTCTCATCCAAGAAGTTCTAAGTGAAAAGGTGCCCCTATTTTTAATGCACTCATCATCATTCATCTCTGGGGTTGCGTTTGCCACGTACTTCTCTTGGAAGTTGGCTTTAGTAGCATTTCCAACGCTGCTTTTGCTCATCATCCCTGGCATGATATATGGGAAATACCTAATCTATTTGTCAAAGTCCACTGTGAAAGAATATGGCAAAGCAAACAGCATTGTAGAACAGGCACTTAGCTCCATCAAAACCGTTTATTCATTCACTGCGGAGAAGAGAATCATGGGGAGATATTCAGACATATTGTGTAGAACTTCAAGGCTTGGAATCAAGCAAGGCATAGCAAAGGGCCTTGCAGTAGGAAGCACAGGTATATCTTTTGCAATTTGGGCTTTTCTTGCTTGGTATGGAAGCCGTTTGGTTATGTACAAAGCTGAAAGCGGTGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTTGGAGTGGTACTTCCTGATTTGAAGTACTTCACGGAAGCATCTGTTGCTGCTTCACGAATATTTGACATGATTGACCGAACACCATTAATTGATGGTGAAAACATAAAAGGACTTGTGTTGGAGAGCATTAGCTGGCAGGCTAGACTTTGA 1119 0.4209 MGSPKKDETETETQKVVEMGRKERANSITIILRYADWIDVVLMLMGAVGAIGDGMSTNVLLLFASRIMNSLGYSNNLQSTSNTYMAEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDLQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWKLALVAFPTLLLLIIPGMIYGKYLIYLSKSTVKEYGKANSIVEQALSSIKTVYSFTAEKRIMGRYSDILCRTSRLGIKQGIAKGLAVGSTGISFAIWAFLAWYGSRLVMYKAESGGRIYASGISFIMCGLSLGVVLPDLKYFTEASVAASRIFDMIDRTPLIDGENIKGLVLESISWQARL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03183 372 Gene3D ABC transporter type 1, transmembrane domain 4 370 IPR036640 GO:0005524|GO:0016020
Pumo6g03183 372 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 343 - -
Pumo6g03183 372 SUPERFAMILY ABC transporter transmembrane region 31 354 IPR036640 GO:0005524|GO:0016020
Pumo6g03183 372 PANTHER ABC TRANSPORTER B FAMILY 6 367 IPR039421 -
Pumo6g03183 372 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g03183 372 Pfam ABC transporter transmembrane region 44 318 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g03183 372 FunFam ABC transporter B family member 1 30 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03183 Pumo-Chr6 74618091 74622463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03183 2 367 Calmodulin-binding Proteins AT2G36910 35.405 6.26e-56 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03183 K05658 - gmx:100819207 652.129