Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03182 ATGGTTGTGCTCGGTGATTTCAATCTCCAAGTGGAAGCAGGGAAAACGGTTGCTCTAGTTGGTGCAAGTGGAAGTGGTAAGTCCACAGTAATAGCATTAGTGCAAAGATTTTATGATGCTGATGAAGGTGTTGTGAGGGTTGATGGTGTAGACATAAAAAGCCTACAGTTGAAATGGATAAGAGGGAAAATGGGCCTTGTAAGCCAAGAACATGCAATGTTTGGGACATCCATAAAGGAAAATATTATGTTTGGGAAGTCAGATGCTACCATGGATGAAATAGTTGCTGCAGCCTCAGCAGCCAATGCTCACAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACCAAGATTGGAGAAAGGGGGGCACTTCTTTCAGGAGGACAAAAGCAACGAATAGCCATTGCAAGAGCCATCATAAAGAATCCTGTAATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATTACTGGTTCAGAATGCCCTCGATCAAGCCTCCATGGGGAGGACTACATTGGTTGTTGCCCACAAGCTATCAACTATTCGAAATGCAGACCTCATAGCAGTTGTCAGTAGTGGTCGCATCATTGAAACTGGCACACACAATGAACTCATCAACAGACCAAATGGCCACTATGCAAAACTGGCAAAATTACAGACACAATTGAGCATGGATGACCAAGATCAAAATTCAGAACTAGGTGCTCTTTCTGCAGCAAGAAGCAGTGCAGGTAGACCAAGCACAGCCAGGTCAAGCCCTGCCATATTTCCAAAGTCACCATTGCCTGATGAAGCCACTCCATCTCAAGTTTCTCACCCTCCACCTTCTTTCACAAGGCTTCTTTCTCTGAATGCTCCTGAATGGAAACAAGGTCTAATTGGAACCCTCTCAGCCATAGCCTTTGGCTCAGTTCAACCCTTATATGCTTTAACTATTGGGGGTATGATTTCTGCATTTTTTGCTGAAAGCCATCAAGAAATGAAGCACAGAATCAGGACTTATTCTTTGATTTTCTGTTCCCTATCCCTTGCTTCTATTATCCTCAATATCTTGCAACACTACAATTTTGCTTATATGGGAGCCAAGTTAACCAAAAGGATAAGACTGCGCATGCTGGAGAATATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTAAGCAATGAGGCTTCTATGGTTAAGTCCCTTGTAGCAGACAGACTCTCCTTACTAGTTCAAACCACTTCTGCTGTCACCATTGCAATGATCATAGGCCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACAATCCTTTGCTTTTATACAAGAAAAGTGTTGCTCTCCACACTCTCAACCAAATTTGTTAAGGCACAGAATCAAAGCACACAAATTGCAGTGGAGGCAGTTTATAACCACAGAATTGTGACTTCATTTGGGAGCATCACAAAAGTTCTACGGTTATTTGATGAGGCGCAAGAGGCGCCGAGGAAGGAGGCGAGGAAGAAGTCATGGCTAGCTGGCATAGGAATGGGTTCTGCTCAGTGTCTAACGTTCATGACGTGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTGGAAAAAAGAGAGATATCAGCTGGGGATGTGTTCAAAACATTTTTTGTGTTGGTGAGCACTGGCAAGGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGCTCAACAGCAGTGGCATCTGTGTTTGAAATTCTTGACCGGAAATCACTAATTCGCAAGACTGGAGATAACACTAACGGCATCAAGTTGGAAAAGATGAGTGGAAAAATAGAGTTGAAGAATGTTGATTTTGCTTATCCAAGCAGGACAGGGACCCCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTTGGGCTGGTTGGAAAAAGTGGGTGTGGAAAATCAACAGTGATTGCCTTAATTCAAAGATTCTATGATGCTGAGAGAGGTTCAGTTAAAGTGGATAATTTAGACATAAGGGAATTAGACATTCACTGGTATAGGCAACACACAGCACTTGTTAGCCAAGAACCTGTGATATATTCTGGCAGCATACGTGATAACATTTTGTTTGGGAAGCAAGATGCAACAGAGAATGAAGTAGTCGAGGCTGCAAAAGCTGCCAATGCTCATGAGTTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGCTATCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTCGCAACCCAAAGATACTACTTCTAGATGAGGCAACAAGTGCCCTGGACGTGCAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGGACTATGGTGGGCAGAACCACCATTGTTGTGGCACATAGGCTTAACACCATCAAAGAGCTTGATTCAATTGCTTATGTGTCTGAGGGCAAGGTGCTGGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAACCTTGCCAGCCATCAAATCCAACTTAGGTAA 2589 0.4365 MVVLGDFNLQVEAGKTVALVGASGSGKSTVIALVQRFYDADEGVVRVDGVDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKSDATMDEIVAAASAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSSGRIIETGTHNELINRPNGHYAKLAKLQTQLSMDDQDQNSELGALSAARSSAGRPSTARSSPAIFPKSPLPDEATPSQVSHPPPSFTRLLSLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAESHQEMKHRIRTYSLIFCSLSLASIILNILQHYNFAYMGAKLTKRIRLRMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRKSLIRKTGDNTNGIKLEKMSGKIELKNVDFAYPSRTGTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDAERGSVKVDNLDIRELDIHWYRQHTALVSQEPVIYSGSIRDNILFGKQDATENEVVEAAKAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLASHQIQLR 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03182 862 CDD ABC_MTABC3_MDL1_MDL2 621 858 - -
Pumo6g03182 862 Gene3D - 3 225 IPR027417 -
Pumo6g03182 862 CDD ABC_6TM_Pgp_ABCB1_D2_like 286 602 - -
Pumo6g03182 862 Gene3D ABC transporter type 1, transmembrane domain 264 607 IPR036640 GO:0005524|GO:0016020
Pumo6g03182 862 ProSitePatterns ABC transporters family signature. 125 139 IPR017871 GO:0005524|GO:0016887
Pumo6g03182 862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 621 857 IPR003439 GO:0005524
Pumo6g03182 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 858 IPR027417 -
Pumo6g03182 862 Pfam ABC transporter 642 788 IPR003439 GO:0005524
Pumo6g03182 862 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 297 584 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g03182 862 Pfam ABC transporter 5 153 IPR003439 GO:0005524
Pumo6g03182 862 FunFam ABC transporter B family member 4 1 233 - -
Pumo6g03182 862 SUPERFAMILY ABC transporter transmembrane region 284 598 IPR036640 GO:0005524|GO:0016020
Pumo6g03182 862 MobiDBLite consensus disorder prediction 228 259 - -
Pumo6g03182 862 FunFam ABC multidrug transporter SitT 611 859 - -
Pumo6g03182 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 224 IPR027417 -
Pumo6g03182 862 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 309 854 IPR039421 -
Pumo6g03182 862 SMART AAA_5 13 205 IPR003593 GO:0016887
Pumo6g03182 862 SMART AAA_5 648 840 IPR003593 GO:0016887
Pumo6g03182 862 Pfam ABC transporter transmembrane region 298 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g03182 862 MobiDBLite consensus disorder prediction 228 279 - -
Pumo6g03182 862 Gene3D - 611 861 IPR027417 -
Pumo6g03182 862 FunFam Putative ABC transporter B family member 8 264 607 - -
Pumo6g03182 862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 2 222 IPR003439 GO:0005524
Pumo6g03182 862 ProSitePatterns ABC transporters family signature. 760 774 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03182 Pumo-Chr6 74613081 74618056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03182 3 862 Calmodulin-binding Proteins AT2G36910 45.465 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03182 K05658 - gmx:100801088 1543.87