Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03178 ATGATGGAACTTCAGGAGACGAATGAAAGGCTGTTTTACAAACTTCTAATTGATAATGTTGAGGAACTGCTCCCAATTGTGTATACTCCTGTTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATCTTCAATCGTCCTCAGGGTCTTTTCATAAGTTTGAAAGAGAAGGGGAAGATCCTTGAAGTGTTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTGTAACAGATGGTGAACGAATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCCTTGTACACAGCACTAGGAGGAGTTCGACCATCAGCTTGTTTGCCTATAACGATTGATGTGGGGACAAACAATGAGAAATTACTGAATGATGAGTTTTACATTGGGCTTAGACAAAAGAGGGCAACTGGGCAGGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTATGGAGAAAAAGTTCTTATTCAGTTTGAAGATTTTGCAAACCACAATGCTTTTGAGTTGCTTGCAAAATATGGTACAACTCATCTTGTTTTCAACGATGATATTCAGGGGACTGCATCTGTTGTTCTTGCTGGGGTTGTGGCAGCCTTGAAGCTCATTGGTGGTACTCTGGCTAACCATACATTCTTGTTCCTTGGTGCTGGAGAGGCAGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTGATTGTTAGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCTTGGGCTCATGAGCATGAGCCTGTTGGCAGTCTCTTAGAAGCTGTTAAGGTAATCAAGCCTACAGTTTTGATTGGATCATCAGGAGTGGGAAAAACATTTACAAAGGAAGTAATTGAGGCTGTGACTTCTATCAATGAAAAACCTCTTGTTTTGGCTCTCTCAAATCCAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACCAATGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGAAGTCCATTTGATCCAGTAGAATACAAGGGCAAAGTGTATTATTCTGGCCAGGCCAACAATGCTTACATTTTCCCTGGCTTTGGTTTGGGGTTGGTAATCTCAGGAGCAATCCGAGTACATGATGATATGCTTCTAGCAGCTTCGGAAGCCTTGGCTAAACTAGTGACTGAGGAGAACTACGAAAAGGGCTTGACTTATCCACCATTCTCTGACATCAGAAACATTTCAGCTAACATAGCTGCAAGTGTTGCTGCCAAGGCTTATGAGCTAGGTTTGGCTACACGTCTCCCTCGTCCTCAGAATCTTGTGAAGTATGCTGAGAGTTGCATGTATTCCCCTGTCTACCGAAACTATAGGTGA 1443 0.4304 MMELQETNERLFYKLLIDNVEELLPIVYTPVVGEACQKYGSIFNRPQGLFISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQKRATGQEYSELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLANHTFLFLGAGEAGTGIAELIALEMSKQTKTPIEETRKKIWLVDSKGLIVSSRKASLQHFKQPWAHEHEPVGSLLEAVKVIKPTVLIGSSGVGKTFTKEVIEAVTSINEKPLVLALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVTEENYEKGLTYPPFSDIRNISANIAASVAAKAYELGLATRLPRPQNLVKYAESCMYSPVYRNYR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03178 480 CDD NAD_bind_1_malic_enz 196 474 - -
Pumo6g03178 480 SMART malic_2 5 186 IPR012301 GO:0004471
Pumo6g03178 480 Pfam Malic enzyme, N-terminal domain 5 185 IPR012301 GO:0004471
Pumo6g03178 480 FunFam NADP-dependent malic enzyme 1 2 190 - -
Pumo6g03178 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 196 479 IPR036291 -
Pumo6g03178 480 PIRSF ME 1 480 IPR001891 GO:0004470|GO:0004471
Pumo6g03178 480 ProSitePatterns Malic enzymes signature. 192 208 IPR015884 GO:0004471
Pumo6g03178 480 SMART Malic_M_2 196 449 IPR012302 GO:0051287
Pumo6g03178 480 Gene3D - 1 193 IPR037062 GO:0004471
Pumo6g03178 480 Pfam Malic enzyme, NAD binding domain 196 448 IPR012302 GO:0051287
Pumo6g03178 480 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 2 195 IPR046346 -
Pumo6g03178 480 Gene3D - 194 480 - -
Pumo6g03178 480 PRINTS Malic enzyme signature 71 100 IPR001891 GO:0004470|GO:0004471
Pumo6g03178 480 PRINTS Malic enzyme signature 11 35 IPR001891 GO:0004470|GO:0004471
Pumo6g03178 480 PRINTS Malic enzyme signature 107 129 IPR001891 GO:0004470|GO:0004471
Pumo6g03178 480 PRINTS Malic enzyme signature 223 239 IPR001891 GO:0004470|GO:0004471
Pumo6g03178 480 PRINTS Malic enzyme signature 167 185 IPR001891 GO:0004470|GO:0004471
Pumo6g03178 480 PRINTS Malic enzyme signature 326 342 IPR001891 GO:0004470|GO:0004471
Pumo6g03178 480 PRINTS Malic enzyme signature 192 208 IPR001891 GO:0004470|GO:0004471
Pumo6g03178 480 FunFam Malic enzyme 194 480 - -
Pumo6g03178 480 PANTHER MALIC ENZYME-RELATED 1 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03178 Pumo-Chr6 74586650 74591294 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03178 K00029 - gmx:100784112 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03178 6 74586650 74591294 Pumo7g00265 7 3112891 3118463 ECH
Pumo6g03178 6 74586650 74591294 Pumo4g04192 4 82834579 82841316 ECH
Pumo6g03178 6 74586650 74591294 Pumo10g00974 10 12631450 12636376 ECH
Pumo6g03178 6 74586650 74591294 Pumo6g03178 6 74586650 74591294 ECH
Pumo6g03178 6 74586650 74591294 Pumo6g03178 6 74586650 74591294 PCT