Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03166 ATGGTCGAGCCAGCAGCAAGCTCAGAATCAGACACAACCAGAAACACCAACTCCAATTCACCCTCTTCTTCGTCATCGCCGTCGAGTTCTAAGAAGCGAGCGAGAGACAACAACAACAACAACAAGCATTCGCTGTATAGAGGTGTCCGAATGCGCACGTGGGGCAAATGGGTGTCGGAAATCCGCGAGCCCCGAAAGAAGAACCGAATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCGCATGACGTGGCGGCGCTGACTATAAAAGGCTCTTCCGCCATCCTTAACTTCCCCGAACTCGCCGCCTCGCTTCCCCGACCGGCCTCCAACTCCCCCCGCGACGTGCAGGCAGCCGCCGCCAAGGCGGCCTCCATGGAGGCGCCGCCGCGGACCCCTCCCTCGCCGGCTGCCAATCCGGAGGACGACCTCGGCGAGATTGTGGAGCTGCCGCCGCTCGGAACGAGTTTCGACTCGCCCGACCTGAGTACCGAGTTCGTTTTCCTCGACCCTGGATGA 528 0.6193 MVEPAASSESDTTRNTNSNSPSSSSSPSSSKKRARDNNNNNKHSLYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPRTPPSPAANPEDDLGEIVELPPLGTSFDSPDLSTEFVFLDPG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03166 175 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Pumo6g03166 175 MobiDBLite consensus disorder prediction 1 47 - -
Pumo6g03166 175 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Pumo6g03166 175 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Pumo6g03166 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 156 - -
Pumo6g03166 175 MobiDBLite consensus disorder prediction 109 165 - -
Pumo6g03166 175 MobiDBLite consensus disorder prediction 1 34 - -
Pumo6g03166 175 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Pumo6g03166 175 CDD AP2 44 104 IPR001471 GO:0003700|GO:0006355
Pumo6g03166 175 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Pumo6g03166 175 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Pumo6g03166 175 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Pumo6g03166 175 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03166 Pumo-Chr6 74293814 74295217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03166 15 173 AP2-EREBP Transcription Factor Family AT5G11590 54.396 7.69e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g03166 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03166 K09286 - gmx:100804801 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03166 6 74293814 74295217 Pumo6g03166 6 74293814 74295217 ECH
Pumo6g03166 6 74293814 74295217 Pumo6g03166 6 74293814 74295217 PCT