Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03163 ATGAGCAACAACGATGTCGATTTGGTCTCTCCAAGAGTTAGTTCTCGTATTCAAAATCAACCTAGGAAGTACTGGGGAAATGATAAGAATAAGAGGATAATGAGTGGTACAGATGGGAACTATTATTATCGAAAGAAAACCAAACCCACGAATATTCCTTCTATGCAGCAACAAGCTTTGGTTGAAGTACGTGAAACCAGTGTAAGCAATGATTCAAATACATGCTCTCGTTCACTTGTGTTCGATGAACAGGAGTTTAGAGGCATTGTAAAGATAAGAGAGTTGTTGAGACTCGCAAATGTCTCTAAACTTCAATCTATTGAGGTTAATGTTGAGAAAAGCATGCCTGAATTGAAGGAATCTGATAATCTTATAAAGCAGCTTCGAAGAGTAGCAAGAAATGTGAATAAGGTTGTTCATTTTGCTCAAGGAGAAATATCCAGAGCACCTTCTGGTTATCCTCATTTGGTTTGTAGGGACCTCAGCAACGGTCTAGAAGCTATACCCATTCCAGTTACTAATAAGTTTGATGATTCTCCTATCCCACCTATCGGCTTTACATATATCACATCTATCCAAGTTGCAAAAAACGTGGAAGTTCCATCTAGTGATGACTATGGTTGTCAGTGCAAAGGAAAATGTTGTTCAACTATCAAGACTTGTTGTGTTAGACTTAATAACAAGTTTCCATATGTTCGTCTTCGAAAATGTAGCAGATTGATCAAAGCTAAAGATATTGTGTTTGAATGTGGTCCAAGATGTGGATGTGGACCTGATTGTGTCAATAGAGTATCTCAGAAGGGTTTGCAGTACCAACTTGAGGTTTACCGTACGCTTAATAAAGGATGGGCTGTTAGAACAAGGGATTTTATTCCTTTTGGAGCTCTAGTTTGTGAACTTGTTGGAGTACTAAAGAGAAGTGAAGACTTGGATAATGCTTCACACAATGACTACATTTTTGAAATTGATTGTTGGCAAACAATCAAAGAGATAGGTGGACGGAAGAAACGGTTGCCTGACGAGCCATTGCCTGCAAAAATTTTCCTTGGAAAAGAGGATGGTGAGACAACAAAAAATGACCCAGAGTTCTGTATAGATTGTAGTTATTTTGGTAATGTGGCCAGGTTCATCAACCACAGTTGTGAACCTAACCTATTTGTTCAATGTGTTCTGAACTCCCACTATGGGGTCAACCAAGCTCGAATTGTCCTACTTGCTGGAAGAAACATACGTCCTTACCAAGAACTTACGTATGACTATGGTTACCAACTTGATAGTGTTGTTGATGACGATGGAAAAATCAAGCAATTACCATGTTACTGTGGTGAAGTTACTTGTCGCAAGCGTTTATACTAG 1356 0.3879 MSNNDVDLVSPRVSSRIQNQPRKYWGNDKNKRIMSGTDGNYYYRKKTKPTNIPSMQQQALVEVRETSVSNDSNTCSRSLVFDEQEFRGIVKIRELLRLANVSKLQSIEVNVEKSMPELKESDNLIKQLRRVARNVNKVVHFAQGEISRAPSGYPHLVCRDLSNGLEAIPIPVTNKFDDSPIPPIGFTYITSIQVAKNVEVPSSDDYGCQCKGKCCSTIKTCCVRLNNKFPYVRLRKCSRLIKAKDIVFECGPRCGCGPDCVNRVSQKGLQYQLEVYRTLNKGWAVRTRDFIPFGALVCELVGVLKRSEDLDNASHNDYIFEIDCWQTIKEIGGRKKRLPDEPLPAKIFLGKEDGETTKNDPEFCIDCSYFGNVARFINHSCEPNLFVQCVLNSHYGVNQARIVLLAGRNIRPYQELTYDYGYQLDSVVDDDGKIKQLPCYCGEVTCRKRLY 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03163 451 Gene3D SET domain 153 451 IPR046341 -
Pumo6g03163 451 ProSiteProfiles Post-SET domain profile. 435 451 IPR003616 -
Pumo6g03163 451 ProSiteProfiles SET domain profile. 271 421 IPR001214 GO:0005515
Pumo6g03163 451 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 117 442 - -
Pumo6g03163 451 SMART PostSET_3 435 451 IPR003616 -
Pumo6g03163 451 ProSiteProfiles Pre-SET domain profile. 206 268 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo6g03163 451 SMART set_7 271 427 IPR001214 GO:0005515
Pumo6g03163 451 Pfam Pre-SET motif 162 263 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo6g03163 451 SMART preset_2 158 255 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo6g03163 451 SUPERFAMILY SET domain 154 427 IPR046341 -
Pumo6g03163 451 Pfam SET domain 282 421 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03163 Pumo-Chr6 74260249 74265004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03163 139 451 EF-hand Containing Proteins AT5G13960 55.556 9.16e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo6g03163 SET 5.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03163 K11420 - gmx:100783066 584.719