Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03161 ATGGCAGAGCCCTCCTCAAATTCAGGGAGGGGAAAGAACGTTGCTGCTGAAGAGAACAACAAGGAAGCCGAAAACGAAATGGCAACTGAGGAGATGCAGCTTCAGTTTATACTGAACGTGGGGATCGTGAAAGACTGCGAGCTGAGCATGCCCTACAGAACCCAACTAACCGGTGACAAGTGGAACCTGTTCTTGCGCGTGGACGAGTTTGAAGACATCCTCTTAGGGTTCTTGAAGGAAGGCGAGGTTGTTAACGAGGGGATTGAGGTGAACGCGTACGACAGAGGTGGCCATGAGTTTGAGATGATGCTCAGGAAATGCGAGATGGGCACCGAGGTTTTCTACGTGCTGAACCGAGGGTGGCTCGCTTTCTGGGACCAGCACCGCTTGGGAGAGAACGATTTCGTTGCCTTGCGCACCTTTCGCCATGCATTTACCGACAAGTTGTCCTTCGCTGTTACTTACACAAAGATGAATTAG 480 0.5125 MAEPSSNSGRGKNVAAEENNKEAENEMATEEMQLQFILNVGIVKDCELSMPYRTQLTGDKWNLFLRVDEFEDILLGFLKEGEVVNEGIEVNAYDRGGHEFEMMLRKCEMGTEVFYVLNRGWLAFWDQHRLGENDFVALRTFRHAFTDKLSFAVTYTKMN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03161 159 Coils Coil 13 40 - -
Pumo6g03161 159 MobiDBLite consensus disorder prediction 1 26 - -
Pumo6g03161 159 Pfam B3 DNA binding domain 83 141 IPR003340 GO:0003677
Pumo6g03161 159 SUPERFAMILY DNA-binding pseudobarrel domain 82 146 IPR015300 -
Pumo6g03161 159 Gene3D - 53 158 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03161 48 159 B3 DNA Binding Superfamily AT4G03170 30.508 6.42e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo6g03161 B3 1.9e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03161 - K05673 pvu:PHAVU_004G169500g 164.466