Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03160 ATGGGTTGCATTTACTCGCGAGTGTGCATAGGCGACAATTGCAGAGGCTCCAGCATCAACGGAGACCCTATCGCGCGAAACGACGTCGCCGAAGTCGCCAACTTCTCGCCATCCTCTTCCGATGTCGAAGAAGGCGAAATCAGAGACCAATTGAACCAATTGAGCATCACGCGAGACTCCGAAGCTGGAATCCGAAGACTCGCTAGGGTTTCCGCGCAGTTTCTTCCACCGGACGGTTCCCGAATCGTTAAGGTTCCTTCTGGAAACTTCGAATTGCGATACTCCTTCTTGTCGCAACGAGGTTACTACCCCGATGCACTCGATAAAGCTAACCAAGACAGTTTCTGCATCCACACACCTTTCGGTACGAGCCCTAACGACCATTTCTTCGGCGTCTTCGACGGCCATGGTGAGTTCGGAGCTCAGTGTTCTCAGTTCGTGAAGCGGAAATTGTGTGAGAATTTGCTCAGGAACTCCAAACTCCGTGCTGATCCTGTTGAGGCTTGTCATGCGGCGTTTTTAGCGACGAATTCGCAGCTGCACAATGATGTTTTGGATGATAGCATGAGCGGGACGACAGCGATCACGGTGCTGGTCAGAGGGAGGACTATATACGTGGCGAATTCCGGCGATTCGAGGGCGGTGATCGCGGAGAAGAGAGGGAAAGAGGTTGTGGCCGTTGATTTGTCTATTGATCAGACGCCTTTTAGGAGTGATGAGCTTGAGAGAGTGAAGATGTGTGGGGCGACGGTTCTTACTTTGGATCAGATTGAAGGGTTGAAGAACCCTGATGTGCAGTGTTGGGGCACTGAGGAAGGTGATGATGGTGACCCTCCTAGGTTGTGGGTGCCCAATGGGATGTACCCGGGGACGGCTTTCACGAGGAGTATTGGTGATTCCATTGCTGAGACTATTGGGGTGGTGGCGAATCCTGAGATTGTGGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTGGCCAGTGATGGGGTGTTTGAGTTTTTGTCTAGCCAGACTGTGGTTGAAATGGTTGCGAAATTTAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCAGAATCTTATCGGCTCTGGCTACAGTACGAAACTCGTACAGATGACATTACAGTCATCATTGTGCATGTAAATGGGCTAACTGAATCTGCTGTTGGTCAGTCAGCAAGTTATGGTGATGTTTTGCGAAACCCTGTGCCTCAAGTTGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAGCGCTAGAAACCATCGTGTAAGGCATGACTTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCCTAGAAAATGGGCAAGCTTGGGTTCCTCCATCTTCAGCCCATAGAAAGACATGGGAAGAAGAAGCACATATAGAGCAGGCGTTGCATGATCATTTTCTCTTCCGAAAACTTACTGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTGGAGGTCCAACCTGGGGATGTTATAGTCAAACAGGGTGGCGAAGGCGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAGGTCTTGGCGACTCAGGAAGAAAAAGATGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTTTCATGCTTTGGAGAACTTGCTCTAATGTACAATAAACCCCTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAACGAGAAGATTTTAGAGGGATTTTAATGTCAGAATTCTCCAACTTGTCATCATTGAAGTTGCTTCGGTCTGTAGATCTCCTCTCAAGGTTGTCAATTTTACAACTTAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATAGACAAAAATGAAGTCCTTGCATTGTACATTATCCAGAAGGGACGAGTGAAAATCACTTTTGATTCTGATTTATTGACGAGTTCAAATGCCTACAGCCTCAAGCCAGACATCCAAAATGAGGATGATGTACAGAGCAGAAAAGAACTGTCAATAGAGAAGCCTGAGGGAAGCTATTTTGGTGAATGGGCCCTTCTTGGTGAAAACATTGGTTCCTTGAGTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCTGTTATTGGCTCCTTACAAAAGATTTCTCTGGAAGATCACAAGTCAAGGGATAATTCCAAGGATTTGACTAGAAATTATGATTTTTCATCATTTGATAAAGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACGCTATATTCCACTGACTGCTCTGAAATAGGGCTTGCAAATTTAAGAGATTCAGAAAATTGGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAAGGCTAGGAAAGGAATCACAAGTCTTGAAAGAGAAAAATTTGATTAAGGGTATGGGCTCTTCAGCTTGTATACCACAGGTTTTATGCACTTGTGCTGACCGCATGCATGCTGGAATACTGCTAAATACTCACCTTGCTTGCCCCTTGTCTTCCATACTTTCAAGTCCTTTTAGTGAATCAGCAGCGCAGTTTTGTGCTGCTTCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAACGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAGCAAACTGGACATATACAGCTGGTGGACTTCAGATTTGGAAAACAGCTTTCTGGTGAGAGAACATTCACAATTTGTGGGATGGCAGATTCACTGGCTCCAGAGATTGTTTTGGGGAAAGGCCATGGTTTCCCTGCCGACTGGTGGGCATTGGGAGTTTTAATATATTTTATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAACGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAGCTACATCTTCCCGAGACTTTTAGCCCTGAAGCTGTTGATCTCATCTCCAAGCTACTTGAAGCGGAAGAAAACACTAGACTTGGTAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAATGGTATTGAATGGGAAGGGATTAGATACCACACCTTTCCTGTTCCTCAGGAAATTATTTCTCGTATAACACAGTACTTGGAAGTTCATTATGAGGATTGTAGTACTGGTTATCTGGGGTCCCCATTACAGGAGGTAAAAGAACTTAATGTGCCTGAATGGCTTGAGGACTGGTAG 3225 0.4552 MGCIYSRVCIGDNCRGSSINGDPIARNDVAEVANFSPSSSDVEEGEIRDQLNQLSITRDSEAGIRRLARVSAQFLPPDGSRIVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNSKLRADPVEACHAAFLATNSQLHNDVLDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAEKRGKEVVAVDLSIDQTPFRSDELERVKMCGATVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTESAVGQSASYGDVLRNPVPQVVEVTGSESPSTFGWSARNHRVRHDLSRARLRALENSLENGQAWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVQPGDVIVKQGGEGDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDKNEVLALYIIQKGRVKITFDSDLLTSSNAYSLKPDIQNEDDVQSRKELSIEKPEGSYFGEWALLGENIGSLSAVAVGDVVCALLTKDKFESVIGSLQKISLEDHKSRDNSKDLTRNYDFSSFDKVQLSDLEWRKTLYSTDCSEIGLANLRDSENWLTLKRFSKPKVKRLGKESQVLKEKNLIKGMGSSACIPQVLCTCADRMHAGILLNTHLACPLSSILSSPFSESAAQFCAASVVTALEDLHKNGVLYRGVSPDVLMLEQTGHIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPETFSPEAVDLISKLLEAEENTRLGSQGPDSVKSHPWFNGIEWEGIRYHTFPVPQEIISRITQYLEVHYEDCSTGYLGSPLQEVKELNVPEWLEDW 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03160 1074 SMART serkin_6 770 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03160 1074 SMART cnmp_10 603 740 IPR000595 -
Pumo6g03160 1074 SMART cnmp_10 477 600 IPR000595 -
Pumo6g03160 1074 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Pumo6g03160 1074 SUPERFAMILY cAMP-binding domain-like 443 587 IPR018490 -
Pumo6g03160 1074 SUPERFAMILY PP2C-like 81 385 IPR036457 -
Pumo6g03160 1074 Pfam Cyclic nucleotide-binding domain 496 587 IPR000595 -
Pumo6g03160 1074 Pfam Cyclic nucleotide-binding domain 622 725 IPR000595 -
Pumo6g03160 1074 SMART PP2C_4 89 381 IPR001932 -
Pumo6g03160 1074 PRINTS cAMP-dependent protein kinase signature 498 512 - -
Pumo6g03160 1074 PRINTS cAMP-dependent protein kinase signature 548 557 - -
Pumo6g03160 1074 PRINTS cAMP-dependent protein kinase signature 721 733 - -
Pumo6g03160 1074 PRINTS cAMP-dependent protein kinase signature 513 527 - -
Pumo6g03160 1074 ProSiteProfiles Protein kinase domain profile. 762 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03160 1074 SUPERFAMILY cAMP-binding domain-like 595 731 IPR018490 -
Pumo6g03160 1074 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 460 1032 - -
Pumo6g03160 1074 Pfam Protein phosphatase 2C 123 362 IPR001932 -
Pumo6g03160 1074 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 88 385 - -
Pumo6g03160 1074 ProSiteProfiles cAMP/cGMP binding motif profile. 477 586 IPR000595 -
Pumo6g03160 1074 Gene3D - 88 384 IPR036457 -
Pumo6g03160 1074 CDD PP2Cc 109 383 IPR001932 -
Pumo6g03160 1074 ProSiteProfiles PPM-type phosphatase domain profile. 93 383 IPR001932 -
Pumo6g03160 1074 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 451 591 - -
Pumo6g03160 1074 Gene3D Phosphorylase Kinase; domain 1 760 846 - -
Pumo6g03160 1074 Gene3D Transferase(Phosphotransferase) domain 1 847 1031 - -
Pumo6g03160 1074 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 593 741 - -
Pumo6g03160 1074 ProSiteProfiles cAMP/cGMP binding motif profile. 603 726 IPR000595 -
Pumo6g03160 1074 Gene3D Jelly Rolls 592 747 IPR014710 -
Pumo6g03160 1074 SUPERFAMILY Protein kinase-like (PK-like) 749 1044 IPR011009 -
Pumo6g03160 1074 Pfam Protein kinase domain 781 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03160 1074 CDD CAP_ED 603 726 IPR000595 -
Pumo6g03160 1074 Gene3D Jelly Rolls 451 591 IPR014710 -
Pumo6g03160 1074 CDD CAP_ED 477 586 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03160 Pumo-Chr6 74174633 74183782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03160 1 1074 PP2C-type Phosphatase Gene Family AT2G20050 68.108 0.0 1508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Pumo6g03160 Pkinase 3.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03160 - - gmx:100799821 2056.57