Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03159 ATGAATCAGCTTGGTGGTGTTATCCTTTTGGTTCTCTCAGTCTTGTTCCTCCATGTTAGAGCACAGACTGCTGAACCTTCAGGGGATGCTGTCTCAAATTTCCAACCAAGCCTTGCTGTTGTCATAGCAATCCTTGGCATCATGTTTTTACTGACATTCTTTCTTCTCATGTATGCAAAATTCTGTCAACGCCGCGTTTCGGCACCCGTTGGAGACCCAGAAAATCAACTCTCTCTTGTGAGATCAAGGTCTAGATTCTCAGGAATTGACAAGACTGTCATAGAATCACTCCCCTTCTTCAGATTCTCTTCACTCAAAGGGTCAAAGGAAGGGTTGGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTTGAAATTCTCAGACTTCTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAAGCACTCTAGCTGTCCTATTTGCAGGCACAGGGTCAACCCTGAGGACCACACAACCTTCACATATTCAAACAGTTTAAGGAGGCTAGCAAACCAGTCAGAGCTAGGTGAAGAATCTAACATAGAGATCTTTGTCCAGAGAGAGGAAGAGCATCATGGTTCATCCAGATTCAGTGTTGGAGGCAGCTTTCGAAAAACGGGAAGAGATGTCAAGGAAGAAGAATTGCTCATTGAAAAAGGAGCAGAAGAAAGTGATGGTAATCAGAAGGGGTATCATAAACACAACCACAGGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTGAGTTCTTCAGACCTTATGTTTTTGAATTCAGAGATGCTGAATGCTACATCAAGCAACAGGTTCGGCACCTTGGAATCAAATGCTGACTTGATGGCAACTACAAGAGGGCTGGTGGAAAATGAGCAAATTATGAACATCAAGGAGGAGATGGAGAGGAAGATTTTCTTTGAGAGCAAAGTTGGTGCACTAAACAACATCAAATCAGTTTCAGATAAGGATCCTCATTTTACATCAGATTCTGCAGGAAAATCAAGTCATGCACCAAAGTATGTGAACCCAGGTGAGAAAAGGTCAATGTCAGAAATCACTGCTGTCTCTAGATTTGGAGATTTAGGCATGAAAATGAGGGTCTTAAAGGATTCTTCTTCCCTTCAAAACAACCTTAAAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATTGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGTCTCAGCAATCTCAGAATAAACAACAGCCATTTGATGTATAA 1281 0.4184 MNQLGGVILLVLSVLFLHVRAQTAEPSGDAVSNFQPSLAVVIAILGIMFLLTFFLLMYAKFCQRRVSAPVGDPENQLSLVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHRVNPEDHTTFTYSNSLRRLANQSELGEESNIEIFVQREEEHHGSSRFSVGGSFRKTGRDVKEEELLIEKGAEESDGNQKGYHKHNHRITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFGTLESNADLMATTRGLVENEQIMNIKEEMERKIFFESKVGALNNIKSVSDKDPHFTSDSAGKSSHAPKYVNPGEKRSMSEITAVSRFGDLGMKMRVLKDSSSLQNNLKEERMRQIWFPIARRTAQWFVNRERRSQQSQNKQQPFDV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03159 426 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Pumo6g03159 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 412 - -
Pumo6g03159 426 SMART ring_2 114 155 IPR001841 -
Pumo6g03159 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
Pumo6g03159 426 CDD RING-H2_EL5-like 113 156 - -
Pumo6g03159 426 FunFam RING-H2 finger protein ATL43 89 163 - -
Pumo6g03159 426 Pfam Ring finger domain 113 156 IPR001841 -
Pumo6g03159 426 MobiDBLite consensus disorder prediction 331 355 - -
Pumo6g03159 426 SUPERFAMILY RING/U-box 93 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03159 Pumo-Chr6 74170296 74172051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03159 7 426 C3H Transcription Factor Family AT4G28890 48.775 2.53e-118 350
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03159 6 74170296 74172051 Pumo6g03159 6 74170296 74172051 ECH