Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03148 ATGTCTGTGCCATTGGAGCAAGGCTATGTAGGCTTATCAGAGGTTCCTGCAATGGAAGGTTCTGACAAGTTTTCTGAGAGGACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTGCCAGGCTCTGAGTCACCAGAGAGAGATGAGGATGTGGAGGACAAGAAATGTGCACCCTTTAGGCATGGTCAAGAGTTTGACACCATTGATGGGGGTTCTGGGAAGTGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTTTGGGGAAAGATGGTGGCTTGTTCTCTCCAAGGGGTGTTGGTGTTAGTGCTGGCAAGGTTGAGTGTACCAACCAACAAACTTCTGTTGTGAAAGATAAAGTTCCTCAGTCTCCAAAGCCATTGAATGAGAAGAAGCCTCAGATATCTGCTCCTGCTGCAAAGGAACAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCCAATCAGCCACAAAAGAATGATGACGATGCAGAAGCCAAGTCTGGATGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGACCTCAAAAACTTTTGCACTTACTTGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGTTCCCATGGAGTTTGTGGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGACCTCCTTCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACCGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGGTGAGGCTGACACATACAACAATGTGCTTTCTTTGTTTTATATCTTGTTGCATTGA 915 0.4557 MSVPLEQGYVGLSEVPAMEGSDKFSERTSGGLNLKATELRLGLPGSESPERDEDVEDKKCAPFRHGQEFDTIDGGSGKWLLSGNGGSEVGLGKDGGLFSPRGVGVSAGKVECTNQQTSVVKDKVPQSPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMANQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFCTYLELSSALEKMFSCFTISQCGSHGVCGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLGEADTYNNVLSLFYILLH 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03148 304 Gene3D - 172 292 - -
Pumo6g03148 304 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 285 IPR003311 GO:0005634|GO:0006355
Pumo6g03148 304 MobiDBLite consensus disorder prediction 1 31 - -
Pumo6g03148 304 MobiDBLite consensus disorder prediction 118 144 - -
Pumo6g03148 304 Pfam AUX/IAA family 37 287 IPR033389 -
Pumo6g03148 304 ProSiteProfiles PB1 domain profile. 178 280 IPR000270 GO:0005515
Pumo6g03148 304 SUPERFAMILY CAD & PB1 domains 175 279 - -
Pumo6g03148 304 FunFam Auxin-responsive protein 173 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03148 Pumo-Chr6 74032746 74040033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03148 162 283 B3 DNA Binding Superfamily AT2G46530 30.328 4.18e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pumo6g03148 AUX_IAA 3.8e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03148 K14484 - gmx:100803754 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03148 6 74032746 74040033 Pumo6g03148 6 74032746 74040033 ECH
Pumo6g03148 6 74032746 74040033 Pumo6g03148 6 74032746 74040033 PCT