Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03145 ATGTTAGATTTCTCTAACAATAAGACAGATGCGAGGCATCCACCACCAGATCGATCTTCTGAGTGCAACAGCACTGCAGCTGGTGGGGCACTCAAGAAAGCTAGGGTTCAACCCTCTGCTACAACACAGACTACATTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCACTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACGGCCTCTGTCTTGTTAGAAGCTCTTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCTCTTAGCTTACCATACTTGAGCGGTGGATCAGGAAACACGAGGCAGCAACATTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTGGTGCCAGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGATTATTGGGCTCCAGCCCTAGGAGGGGGCTTTCGTTAG 555 0.4829 MLDFSNNKTDARHPPPDRSSECNSTAAGGALKKARVQPSATTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEALGYIRFLQSQIEALSLPYLSGGSGNTRQQHSVQGEKNCIFPEDPGQLLNENCLKRKAAGEPDTQEEPKKGLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03145 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 97 IPR036638 GO:0046983
Pumo6g03145 184 FunFam transcription factor bHLH68 isoform X1 44 97 - -
Pumo6g03145 184 MobiDBLite consensus disorder prediction 1 43 - -
Pumo6g03145 184 Gene3D - 39 96 IPR036638 GO:0046983
Pumo6g03145 184 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 166 - -
Pumo6g03145 184 CDD bHLH_AtbHLH_like 45 94 IPR045239 -
Pumo6g03145 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 37 86 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03145 Pumo-Chr6 73988528 73991976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03145 1 126 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 67.669 1.27e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03145 - - gmx:100786555 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03145 6 73988528 73991976 Pumo6g03145 6 73988528 73991976 ECH
Pumo6g03145 6 73988528 73991976 Pumo6g03146 6 73992092 73992552 PCT