Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03139 ATGGATCCTCCACCCAAGGCTTGGAGCATCCACATCCGCTCCGAGATAACCGCCAAGTACGAGGTTCTCGACCGGGTCGGGTCGGGCGCCTACGCCGACGTCTACCGCGCCCGCCGCCTCTCCGACGGCGCCGCGGTGGCGCTCAAGGAGGTCCACGACTCCCAATCCGCCTCGCGCGAAATCGAAGCCCTGAGGCTCCTGAAAGGGTCCCAAAACGTCGTCGTGCTGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCGGTGCTCGTGCTCGAGTTTATCGGAACTGACCTTGCGGCGGTGATCGGAGAAGGTGTTGGAGAAGTAAAGAGGTGGATGGTTCAGGTTCTGAGTGCGGTGGATGAGTGCCATAGGAACATGATCGTGCATAGGGACTTGAAGCCCGCCAATTTTTTGGTTTCCGATCATGGGGTCCTTAAGTTAGCGGATTTTGGACAGGCAAGGATACTTGTGGAGTCTGGATTTGATGCTCCCGAGGAGAACCCGCCACCATATGAGGATGATGTTTCACATAGTGAAAGCTCACTCCAAAATCCTCAAGTTATTTCCCAATTAGATAACTTAAACCAAACTGGATATGAAAATCCGGATCAGGGAACCGTGAGTCATGAAGAATATTTCAGAGTTTTGGATGAGTTGAAAACCAAGAGCTACTCATATGACACTGATAAGGATACAAACATCCATGATGGAAACACCTCATGTCTTGCAACATGCACAACGAGCGACATAGACGATGATCTTTGCAAGGGTTCTTTTACCTACGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACTCGGTGGTTCCGGGCTCCTGAACTACTCTATGGATCCACAGACTATGGTTTAGAGGTTGATCTTTGGTCATTGGGATGTGTCTTTGCTGAACTCTTAACATTGAAGCCATTGTTTCCAGGGACAAGTGATGTAGACCAACTCAGCAGAATTATCAGTGTTTTGGGGAACATTAATGAGGAAACTTGGCCTGGTTGTTCCAAACTTCCTGATTATGGAGCAATCTCATTTAATAAGGTGGAAAATCCTAGTGGTCTTGAAGCATGCATGCCCAATTGCACCCCTGATGAAGTTTCTTTAGTCCAAAGACTGGTTTGTTATGATCCTGCTAAAAGAGCCACAGCAATGGAGTTACTTCAGGACAAGTACTTTAGTGAAGAACCTCTTCCTGTTCCAATTTCTGAGTTGCGGTTCCTTTGA 1260 0.4897 MDPPPKAWSIHIRSEITAKYEVLDRVGSGAYADVYRARRLSDGAAVALKEVHDSQSASREIEALRLLKGSQNVVVLHEFFWREDEDAVLVLEFIGTDLAAVIGEGVGEVKRWMVQVLSAVDECHRNMIVHRDLKPANFLVSDHGVLKLADFGQARILVESGFDAPEENPPPYEDDVSHSESSLQNPQVISQLDNLNQTGYENPDQGTVSHEEYFRVLDELKTKSYSYDTDKDTNIHDGNTSCLATCTTSDIDDDLCKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTLKPLFPGTSDVDQLSRIISVLGNINEETWPGCSKLPDYGAISFNKVENPSGLEACMPNCTPDEVSLVQRLVCYDPAKRATAMELLQDKYFSEEPLPVPISELRFL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03139 419 ProSiteProfiles Protein kinase domain profile. 20 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03139 419 SUPERFAMILY Protein kinase-like (PK-like) 4 412 IPR011009 -
Pumo6g03139 419 Gene3D Transferase(Phosphotransferase) domain 1 108 409 - -
Pumo6g03139 419 SMART serkin_6 20 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03139 419 Gene3D Phosphorylase Kinase; domain 1 11 107 - -
Pumo6g03139 419 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Pumo6g03139 419 FunFam Cyclin-dependent kinase F-1 11 105 - -
Pumo6g03139 419 MobiDBLite consensus disorder prediction 162 184 - -
Pumo6g03139 419 Pfam Protein kinase domain 20 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03139 419 Pfam Protein kinase domain 275 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03139 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Pumo6g03139 419 PANTHER CELL DIVISION PROTEIN KINASE 19 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03139 Pumo-Chr6 73881065 73883603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03139 4 416 Core Cell Cycle Gene Families AT4G28980 62.295 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Pumo6g03139 Pkinase 7.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03139 - - gmx:548056 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03139 6 73881065 73883603 Pumo6g03139 6 73881065 73883603 ECH
Pumo6g03139 6 73881065 73883603 Pumo6g03139 6 73881065 73883603 PCT