Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03129 ATGGGGGAAGGTGAAGGAGGAGGTGATTGCGCTCCGAAGAATGCGTCGTTGCCTGAAGTTGTTGCTCCGGCGGCAGCGTCGACGGCGTCGTTGGAAGTTCCGGCGAAGAAGCTGGCGCGGCAGCTCGATTTCACCGGCGCGCCGGAGCATCCGCAGCAGCCGCAGTCGCAACCGCCGCAGCAACCGGTGGCGGTGTTGCCGTTGCCGCCGCAGGCGCCTCATGTGAGGGTTGGGAAACCAGAATCTCCAAAATCAAGACCAAGACCTAACTTTGAAATGAAAGACGCTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAGCTGTATTGTGAATGTTTTGCATCAGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACCTTAGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCTAGCAGTCCTCATGGAACACGTGATAGCAGGGAGGAGGCTGGGGAAGTTTTAATATTAGGAAAACATAACAAGGGGTGTCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTTCATGGAGATCTAAATAACATGGCATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATTCATCTCCTCCAGTATCTAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTACAACCAAGGATCCATCCATTAGCAAGTTGGGACAACAGGTAAACCTTGTCAGGGGTCCAGCACCTTCCTCATCCTTGTCACCTGCCTCAGGTGCTCGTGTTGGAACTGCAACATTAGGCCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATTATACAACCACAGCACCTCAAGGAGCTATGCTCAGTTCTGGTGCTAGTATCAGGACAAGCTGCAAAGACACTTACAGACCAGAAAATTTTAATGGAAAAGCAAGCAGAAGATCAGACGGAAACTTCCCTTGCTTCTTCAAGTCAAGAGCAATTACCAAGTCAAAAGGAAGGTCAAGTTGAGAAGATTGTGGCAGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGTCCAGATAATTCAAGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAACCGCCTCCCCCATTGCGCCAATGGCCCATGCTTGCAATACATCTTCACAATTTCCTTATGGACAAGGAATGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACAAAGTTTAGAGATTTTCTCAATAGGGTTATCACTATGGGAGAAATAAACGAAACAAAGTGTTCTTCATTGGCCAGAAATGAATTAGAGAGTCAAAAGGACCCAATCATCAATGGCATTGGAAATGCCAGTTCTGAGATAGTGCGTCAGCAGGGAGCCACTAGCAATGGTGTTACTAAACCTGTTGTTTCACCCATGGCTACAACTTCAGCATCTATGATCCCTGGTAATATTGCTGAAATTGGGGAGACTAAGGTGAAAATTGAAAAAGAGATATGA 1713 0.4513 MGEGEGGGDCAPKNASLPEVVAPAAASTASLEVPAKKLARQLDFTGAPEHPQQPQSQPPQQPVAVLPLPPQAPHVRVGKPESPKSRPRPNFEMKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDLNNMAYIQQAANAAITGAIGSSGYSSPPVSKKRKGQELFFWPTTKDPSISKLGQQVNLVRGPAPSSSLSPASGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKILMEKQAEDQTETSLASSSQEQLPSQKEGQVEKIVADDCSSANQTDKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTTASPIAPMAHACNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARNELESQKDPIINGIGNASSEIVRQQGATSNGVTKPVVSPMATTSASMIPGNIAEIGETKVKIEKEI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03129 570 ProSiteProfiles CRC domain profile. 100 224 IPR005172 -
Pumo6g03129 570 MobiDBLite consensus disorder prediction 39 97 - -
Pumo6g03129 570 MobiDBLite consensus disorder prediction 52 76 - -
Pumo6g03129 570 MobiDBLite consensus disorder prediction 395 414 - -
Pumo6g03129 570 PANTHER TESMIN/TSO1-RELATED 35 494 IPR028307 -
Pumo6g03129 570 MobiDBLite consensus disorder prediction 366 385 - -
Pumo6g03129 570 MobiDBLite consensus disorder prediction 79 97 - -
Pumo6g03129 570 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 101 136 IPR005172 -
Pumo6g03129 570 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 187 221 IPR005172 -
Pumo6g03129 570 SMART CXC_2 99 139 IPR033467 -
Pumo6g03129 570 SMART CXC_2 184 225 IPR033467 -
Pumo6g03129 570 MobiDBLite consensus disorder prediction 366 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03129 Pumo-Chr6 73781821 73789796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03129 1 517 CPP Transcription Factor Family AT4G29000 55.382 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pumo6g03129 TCR 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03129 - - gmx:100818116 1005.74