Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03120 ATGTCAACTGCCCCCGCGCCGTCTTCACCGCCGGCGAACAACGGCACCGCACCTTCGCCGTCAACTCCGGCGACGCCTTCCGCACCCCCGCCGGCGACACCTTCCGCGCCGCCTCCCGCGACTCCGTCGTCACCTCCGCCGGCAACTCCGTCGTCTCCTCCTCCGGCGACTCCCTCCGCGCCTCGACCGGCGACTCCTTCCTCGCCTCCTCCGGCTACTCCTTCCTCGCCTCCTCCGGCTACTCCCTCCGCTCCTCCACCGTCAATTCCTTCGTCTTCTCCTCCGCCGCCAACCACGCCTTCGACCACGCCGCCATCGTCTTCCCCGCCGTCACCTCCGTCCACCTCGCCACCGTCGCCGCCCAGTGGCGGCGGAGGCGGCGGCAACACTCCGAGTCCACCGTCTCGGAGCTCGCCCTCTCCTCCGTCTGGATCGAACCCGACCACGCCGTCGTCGCCGTCGCCGTCATCGTCGTCGTCGAATATTTCTACCGGCGTTGTTGTTGGAATCGCCGTCGGTGCCGTGGCGGTTCTTCTTGTGTTGAGCATTCTCTGCATATGTTGTCGGAAGAAGAAGAGAAGACGCGATGAGGAGTACTATGCTCCGCCGCCGCCGCAGCAACCGCCGCGGGGACCCAAAGATGATGCATATGGTGGTCCCCCACGTCAATGGCAACACAATGTTCCCCCTCCTCAAGATCATGTGGTCTCAATGATGCCTCCTAAGCCTTCGCCACCAGCAGCTCCACCAGCTTATGTTGCTCAACCTCCCCCGCCACCACCTCCTTTCATCAGCAGCAGTGGCGGGTCTGGATCAAACTTTTCAGGTGGTGAACTGCTTCCTCCTCCTTCTCCAGGAATTGCATTGGGGTTCTCCAAGAGCACGTTCACGTACGAGGAGTTGGCACGCGCAACCGATGGCTTCTCTGATGCTAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAGAGGAATTCTTCCCAATGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGTGGGCAAGGGGAGCGAAGAGGACGACCTACCATGGATTGGCCCACAAGACTAAGAATTGCTTTAGGATCTGCTAAGGGACTGGCATATCTTCATGAAGATTATTTCGGTCTTGCAAAGTTTTCTTCTGATTTCAATACTCATGTTTCTACTCGAGTGATGGGGACTTTTGGGTATTTGGCTCCAGAATATGCTTCTAGTGGGAAACTCACTGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTCCTTGAGTTAATAACCGGACGACGGCCAGTTGATAAAAATCAAACTTTCATGGAGGATAGTCTGGTAGACTGGGCTAGGCCTTTGCTCACCCGTGCTTTGGAAGAGGATGATTTTGATTCTCTGATTGACCCAAGGCTCCAGAATGACTATGATCCTAATGAGATGGCACGAATGGTGGCATGTGCTGCGGCTTGCACACGTCATTCGGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTCCGTGCTCTGGAAGGAGATGTGTCTCTAGCAGATCTTAATGAAGGAATCAGGACCTGGACACAGCACTATGTACAGTTCTCATGA 1596 0.5652 MSTAPAPSSPPANNGTAPSPSTPATPSAPPPATPSAPPPATPSSPPPATPSSPPPATPSAPRPATPSSPPPATPSSPPPATPSAPPPSIPSSSPPPPTTPSTTPPSSSPPSPPSTSPPSPPSGGGGGGNTPSPPSRSSPSPPSGSNPTTPSSPSPSSSSSNISTGVVVGIAVGAVAVLLVLSILCICCRKKKRRRDEEYYAPPPPQQPPRGPKDDAYGGPPRQWQHNVPPPQDHVVSMMPPKPSPPAAPPAYVAQPPPPPPPFISSSGGSGSNFSGGELLPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGERRGRPTMDWPTRLRIALGSAKGLAYLHEDYFGLAKFSSDFNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKNQTFMEDSLVDWARPLLTRALEEDDFDSLIDPRLQNDYDPNEMARMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRTWTQHYVQFS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03120 531 MobiDBLite consensus disorder prediction 234 265 - -
Pumo6g03120 531 Gene3D Phosphorylase Kinase; domain 1 290 347 - -
Pumo6g03120 531 MobiDBLite consensus disorder prediction 1 162 - -
Pumo6g03120 531 MobiDBLite consensus disorder prediction 201 215 - -
Pumo6g03120 531 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Pumo6g03120 531 Pfam Protein tyrosine and serine/threonine kinase 377 507 IPR001245 GO:0004672|GO:0006468
Pumo6g03120 531 MobiDBLite consensus disorder prediction 134 149 - -
Pumo6g03120 531 Gene3D Transferase(Phosphotransferase) domain 1 348 515 - -
Pumo6g03120 531 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 173 347 IPR047117 -
Pumo6g03120 531 SUPERFAMILY Protein kinase-like (PK-like) 288 507 IPR011009 -
Pumo6g03120 531 MobiDBLite consensus disorder prediction 11 120 - -
Pumo6g03120 531 PRINTS Proline rich extensin signature 42 63 - -
Pumo6g03120 531 PRINTS Proline rich extensin signature 63 79 - -
Pumo6g03120 531 PRINTS Proline rich extensin signature 4 20 - -
Pumo6g03120 531 PRINTS Proline rich extensin signature 27 39 - -
Pumo6g03120 531 MobiDBLite consensus disorder prediction 194 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03120 Pumo-Chr6 73755204 73758857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03120 132 519 Trihelix Transcription Factor Family AT1G70460 39.485 1.92e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pumo6g03120 PK_Tyr_Ser-Thr 1.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03120 - - gmx:100781944 538.495