Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03112 ATGCGTACCCTTTATATACGCGGTGCTCCCTCATCCAAAGAAAAAACCTCACCCTCTCACATTTTCACTCTCTCTCTCTCTCACTCTCACTCTCACTCTCTGTCACGGACAGAGAAAAACTCAGACATCCCACGTTCACACTTCACACACACCATCCCTCACTGTTTCTTCTCCTTCTTCCTCTTTCTCTCTCTCTTTTTTTTTTTTTTTTTTTCTCTTAATGGAATGATGGAACACAACATCATCGTCAACAACAACAACAACGTGATCGCACCGTTTGTCATAAAAACCTACAACATGGTGAACGATCCCACCACCGATAAACTCATCACGTGGGGCCCAGCCAACAACAGCTTCATCGTCCTCGACCCACTCGACTTCTCTCACTCCCTTCTCCCAGCCTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAGTTCGCGAACGAGTGGTTCCTGCGGGGACAAAAGCACTTATTGAGGAACATCGTGCGGAGGAAGCACGGTGGAGGGAGGACCAATTCCAATTCGCATTCGCATCCCTTGAAGTTGGAGGAGTTGGACGACGAGGCCATGGTGATGGAGATAGCGAGGTTGAAGGAGGAACAAAAAGCGTTGGACGAAGAGCTTCAAGGAATGAACAAGAGGTTAGAGACAACAGAAAAACGACCACAACAAATGATGGCTTTTCTGTGTAAGGTTGTCGAGGACCCGCAGGTTCTTTCTAGGATTCTCCGAGAGAGGGAAAAAAAACACCTCGGCGAGAAAAAGCGCCGCCTCATTCCGCCGCCGCCGTCGACGGCGGCGACGTCTTCATCGTCCTCCTCCGGCATCAGGACGGAGTTCGAAGAAGACGAAGGTAATTATAATATCATGTCTTCGTCGCCGGAGACAGGTTTGGAAATCGATAATAATAATATTTGTTCGGCGGCGGGGTGTTGGGGGGAACAGGGTTGTTATGGGTATAATTACGCCGCCGTGCCGGCGCCGTTGACGGTGGTGGCGCCGGCGGCTCCGGCGATGGGAGGAGGGTATTTGGGGCGTGGGGGGTTTTTTGGGGAAATGGCGGCGGAGGGGAATGGCCTGCCGCCTTATCCGTTTTCGCTGTTAGAAGGTGGCTTTTAG 1173 0.5124 MRTLYIRGAPSSKEKTSPSHIFTLSLSHSHSHSLSRTEKNSDIPRSHFTHTIPHCFFSFFLFLSLFFFFFFSLNGMMEHNIIVNNNNNVIAPFVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRTNSNSHSHPLKLEELDDEAMVMEIARLKEEQKALDEELQGMNKRLETTEKRPQQMMAFLCKVVEDPQVLSRILREREKKHLGEKKRRLIPPPPSTAATSSSSSSGIRTEFEEDEGNYNIMSSSPETGLEIDNNNICSAAGCWGEQGCYGYNYAAVPAPLTVVAPAAPAMGGGYLGRGGFFGEMAAEGNGLPPYPFSLLEGGF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03112 390 SMART hsfneu3 89 182 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g03112 390 Gene3D - 84 183 IPR036388 -
Pumo6g03112 390 PRINTS Heat shock factor (HSF) domain signature 93 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g03112 390 PRINTS Heat shock factor (HSF) domain signature 131 143 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g03112 390 PRINTS Heat shock factor (HSF) domain signature 144 156 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g03112 390 SUPERFAMILY "Winged helix" DNA-binding domain 90 182 IPR036390 -
Pumo6g03112 390 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 88 299 IPR027725 -
Pumo6g03112 390 FunFam Heat stress transcription factor B-4 85 183 - -
Pumo6g03112 390 Pfam HSF-type DNA-binding 93 182 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g03112 390 ProSitePatterns HSF-type DNA-binding domain signature. 132 156 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g03112 390 Coils Coil 200 239 - -
Pumo6g03112 390 MobiDBLite consensus disorder prediction 268 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03112 Pumo-Chr6 73615847 73617833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03112 89 277 HSF AT3G24520 64.767 4.48e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo6g03112 HSF_DNA-bind 7.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03112 K09419 - gmx:100794896 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03112 6 73615847 73617833 Pumo6g03112 6 73615847 73617833 ECH