Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03100 ATGCCCACCATCAAGTTCACCAAGCTCTTCATCAATGGAAATTTTGTTGATTCACTTTCAGGACGAGAGTTTGAGACAATAGACCCAAGAAGTGGAGAAGTGATTGCAAGGATCTCAGAGGGAGACAAACAAGACATTGATCTTGCTGTAAAAGCGTCACGTGTGGCTTTTGATCACGGTCCATGGCCTCGTATGCCCGGCGTTCAAAGAGCAAGAATTTTGATGAAATGGGCAGACCTAATTGACCAAAACGTAGAAGAAATAGCAGAACTAGATGCCAGTGATTCTGGAAAGTTGTACAATCGACTTAAGGCTATTGAAGTTCCTGCAGTAGCAAATACTATACGTTACTATGCTGGTGTTGCTGATAAAATTCATGGAGAGGTATTAAAACCGGCACGGGAGTTTCATGCATATACTTTACTTGAACCAATTGGTGTTGTGGGACATATCATTCCCTGGAATGCCCCTAGTACCATGTTTTTCGCCAAGGTTAGTCCTTCCTTGGCTGCTGGTTGCACAATGGTCCTCAAGCCTGCTGAACAAACACCTCTCTCAGCTTTGTTTTATGCTCATCTAGCTAAACTGGCTGGAATTCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCCCAACTGCTGGTGCTGCAATAAGCTCACACATGGACATTGATAAGGTGAGTTTTACGGGTTCAACAGAAGTGGGGCGTGAAGTAATGCGTGCTGCAGCTAATAGTAATTTGAAACCAGTTTCACTTGAACTAGGAGGCAAGTCACCTGTCATAATTTTTGATGATGCTGATATAGATAAAGCCGTTGACCTTGCATTCTTGGGCGTAGTGTATAACAAGGGAGAAATTTGTTCTGCAGGTTCCCGTGTATTTGTTCAGGAAGGGATCTATGATGAATTTGAGAAGAAGTTGGTGGAGAGGGCAAAAACTTGGGTTGTTGGTGATCCTTTTGATCCTAAAGTTCAGCAAGGACCTCAGGTTGACAAGAAGCAATTTGAAAAAATTCTTTTCTATATCGATCATGGAAAAAGAGAAGGGGCCACCATTTTGACAGGGGGCAAAAGATTGGGTGACAAGGGCTACTACATTGAGCCTACAATTTTCACTAATGTTAAGGAGGACATGCTTATCGCACAAGATGAAATATTCGGTCCTGTGATGGCACTGATGAAGTTTAGGACCATTGAGGAAGCAATTAAAAGTGCCAACAACACTAGATATGGGTTAGCAGCAGGTGTTGTGACCAAGAGCTTGGACATAGCAAACACAATGTCAAGGTCGATTCGTGCAGGCACTGTTTGGATCAACTGTTATTTTGCCTACGGAATGACATTCCTGCTGGAGGATATAAGATGCAGTGGATTTGGAAAAGATTTTGGATTGGAAGCCCTCCACAAGTACCTACAAGTTAAATCTGTTGTCACACCCATTTACAATTCTCCTTGGCTTTGA 1464 0.429 MPTIKFTKLFINGNFVDSLSGREFETIDPRSGEVIARISEGDKQDIDLAVKASRVAFDHGPWPRMPGVQRARILMKWADLIDQNVEEIAELDASDSGKLYNRLKAIEVPAVANTIRYYAGVADKIHGEVLKPAREFHAYTLLEPIGVVGHIIPWNAPSTMFFAKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDKVSFTGSTEVGREVMRAAANSNLKPVSLELGGKSPVIIFDDADIDKAVDLAFLGVVYNKGEICSAGSRVFVQEGIYDEFEKKLVERAKTWVVGDPFDPKVQQGPQVDKKQFEKILFYIDHGKREGATILTGGKRLGDKGYYIEPTIFTNVKEDMLIAQDEIFGPVMALMKFRTIEEAIKSANNTRYGLAAGVVTKSLDIANTMSRSIRAGTVWINCYFAYGMTFLLEDIRCSGFGKDFGLEALHKYLQVKSVVTPIYNSPWL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03100 487 SUPERFAMILY ALDH-like 4 483 IPR016161 GO:0016491
Pumo6g03100 487 FunFam Aldehyde dehydrogenase3 257 446 - -
Pumo6g03100 487 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 11 475 IPR016162 GO:0016491
Pumo6g03100 487 Pfam Aldehyde dehydrogenase family 16 477 IPR015590 GO:0016491
Pumo6g03100 487 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 257 446 IPR016163 GO:0016620
Pumo6g03100 487 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 11 276 - -
Pumo6g03100 487 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 3 477 - -
Pumo6g03100 487 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 253 260 IPR029510 GO:0016491
Pumo6g03100 487 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 281 292 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03100 Pumo-Chr6 73475778 73482238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03100 1 487 Aldehyde Dehydrogenase Gene Family AT3G24503 67.828 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03100 K12355 - gmx:100791918 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03099 6 73467454 73474131 Pumo6g03100 6 73475778 73482238 PCT