Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo6g03098 | ATGGAAGTTTCCCGAGAAAAGCCGAATGGATTCGACGGTGACACATGCAAATGGAACGTTCCAGAGACTCACTTCACCACCCTTATAAAATACCCTTCATCGCTCAACACCCTGCGCATAGCACCTCTTTCATTTCCTTTGATATTCTACGATACGATGCCGAGTCGATCAACGGGAGCGATAACCCAAGACTGGGACCCGGTGGTTCTGCATAAGTCGAAGCCGAAGGCGCAGGACCTCCGCAACCCCAAGGCGGTCAACCAGGCTCTCCGGTCCGGCGCGGAGGTGCAGACGGTGAAGAAGTTCGATGCCGCCTCCAACAGGAAGCCCGGTCCGGCGCTGGAGCGCGTGGCGGGAGAGGTGCGGCACGCGATCCAGAAGGCGCGTCTGGAGAAGAAGATGAGCCAGGCCGAGCTGGCCAAACAGATCAACGAGCGCACGCAGGTCGTGCAGGAGTACGAGAACGGCAAGGCCATGCCCAACCAGGCCGTGCTCGCCAAAATGGAGAGGGTCCTTGGTGTCAAGCTCAGGGGCAAAATCGGAAAATGA | 549 | 0.5792 | MEVSREKPNGFDGDTCKWNVPETHFTTLIKYPSSLNTLRIAPLSFPLIFYDTMPSRSTGAITQDWDPVVLHKSKPKAQDLRNPKAVNQALRSGAEVQTVKKFDAASNRKPGPALERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAMPNQAVLAKMERVLGVKLRGKIGK | 182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo6g03098 | 182 | SMART | mbf_short4 | 124 | 179 | IPR001387 | - | |
| Pumo6g03098 | 182 | Gene3D | - | 109 | 182 | IPR010982 | GO:0003677 | |
| Pumo6g03098 | 182 | Pfam | Multiprotein bridging factor 1 | 63 | 110 | IPR013729 | - | |
| Pumo6g03098 | 182 | SUPERFAMILY | lambda repressor-like DNA-binding domains | 122 | 176 | IPR010982 | GO:0003677 | |
| Pumo6g03098 | 182 | CDD | HTH_XRE | 124 | 176 | IPR001387 | - | |
| Pumo6g03098 | 182 | ProSiteProfiles | Cro/C1-type HTH domain profile. | 125 | 179 | IPR001387 | - | |
| Pumo6g03098 | 182 | Pfam | Helix-turn-helix | 125 | 176 | IPR001387 | - | |
| Pumo6g03098 | 182 | FunFam | Multiprotein bridging factor 1 | 112 | 182 | - | - | |
| Pumo6g03098 | 182 | Coils | Coil | 125 | 147 | - | - | |
| Pumo6g03098 | 182 | PANTHER | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 | 63 | 179 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo6g03098 | Pumo-Chr6 | 73465920 | 73466735 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | MBF1 | Pumo6g03098 | HTH_3 | 5.1e-14 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo6g03098 | K03627 | - | zju:107431864 | 210.305 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo6g03098 | 6 | 73465920 | 73466735 | Pumo6g03098 | 6 | 73465920 | 73466735 | ECH |