Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03092 ATGAGGAAGAAAACCTATTCCGATTTCTCTCTCTTTCTTCCTCTCTTCCTCATTGTAGTGGTTGCACACTCTCTCTGTGCCTCTGCAATCTCACACAATGGACCTCTCACAGACGCAGAAGTCTCCTACATCAAGCAGCGTCAGCTTCTCTATTACAAGGACGAGTTCGGTGACAGAGGAGAAAAAGTGACCGTAGATCCCTCCTTCGTCTTCGAAAACGACCGTTTGAGAAACGCGTACATAGCGTTACAAGCCTGGAAGGAAGCCATTCTCTCCGATCCGAAGAACCTAACGCAAGACTGGGTGGGACCGGATGTCTGCAACTATAGCTACGTTTTCTGCGCTCCGGCGCTGGACAACCCTAAGATCCGCACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATACCTGCCGGAGGAGCTAGGTCTGCTCACCGACCTCGCGCTGCTCCACATCAACACCAACCGCTTCTGCGGCACTGTGCCGCACAAGTTCGACAGGCTAAAGATCCTCTTCGAGTTAGATCTCAGCAACAACCGCTTCGCCGGGAAGTTCCCCGACGTGGTGCTGCGTCTGCCGCAGCTGAAGTTTCTAGATCTGAGGTTCAACGAATTCGAAGGCACGGTTCCGAAGGAGCTCTTCGACAAGGACCTCGACGCGATTTTCATCAACGACAACCGCTTCGTCTTCGACCTGCCGGAGAATTTCGGGAACTCGCCCGTGTCGGTGATTGTGCTGGCGAACAACCGCTTCCACGGATGCGTGCCGGCGGGAATCGGCAACATGAAGAGGCTAAACGAGATTATTTTGATGAACAACGCGTTCAGGTCGTGCTTCCCTGAAGAGATAGGGTTGCTGCAGAACTTGACGGTGTTCGATGTGAGCTACAACCAGTTGCTAGGGCCTTTGCCTGATGCTATTGGTGGTGCGGTGAGTTTGGAGCAGTTGAATGTGGCGCATAACTTGCTATCGGGGAAGATTCCAGAGAGCATTTGTAAGCTTCCGAATCTGCAGAACTTTACTTACTCTTATAACTTCTTCACCGGCGAGCCGCCGAGGTGTCTCGCTTTGCCGGCGTTTGATGACCGCCGCAACTGCCTTCCGGGAAGGCCATCCCAGCGCTCCGCTGGGCAATGTAAGTCGTTTTTGTCGCACCCTGTCAATTGTGATTCTTTTAGGTGTAAGCCTTTTGTGCCTGCATTGCCTCCTCCTCCTCCTCCGTCACCGCCATTGCCGTCGCCACCACCGCCAGTCGCCTGTTTACATTCCTCATTCGCCTCCTCCGCCACCACCACCGGTGTATTCACCGCCGCCTCCACCACCAGTGTATTCCCCACCGCCACCACCTCCAGTGTATTTACCTCCACCGCCCCCACCGTCTCCTCCTCCTCCACCACCACCGGTTTATTCTCCCCCTCCACCACCGCCTTCTCCGCCGCCACCGTCACCGCCTCCTCCTTCACCACCACCGCCAGTCTATTCTCCACCTCCACCTCCACCATCACCACCTCCGCCTTCACCGCCACCACCAGTCTATTCACCACCTCCTCCACCGCCACCAGTCACCGCCACCACCATCGCCGCCGCCACCCTCGCCAGTATATTGTGTAA 1620 0.5593 MRKKTYSDFSLFLPLFLIVVVAHSLCASAISHNGPLTDAEVSYIKQRQLLYYKDEFGDRGEKVTVDPSFVFENDRLRNAYIALQAWKEAILSDPKNLTQDWVGPDVCNYSYVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALLHINTNRFCGTVPHKFDRLKILFELDLSNNRFAGKFPDVVLRLPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPENFGNSPVSVIVLANNRFHGCVPAGIGNMKRLNEIILMNNAFRSCFPEEIGLLQNLTVFDVSYNQLLGPLPDAIGGAVSLEQLNVAHNLLSGKIPESICKLPNLQNFTYSYNFFTGEPPRCLALPAFDDRRNCLPGRPSQRSAGQCKSFLSHPVNCDSFRCKPFVPALPPPPPPSPPLPSPPPPVACLHSSFASSATTTGVFTAASTTSVFPTATTSSVFTSTAPTVSSSSTTTGLFSPSTTAFSAATVTASSFTTTASLFSTSTSTITTSAFTATTSLFTTSSTATSHRHHHRRRHPRQYIV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03092 539 MobiDBLite consensus disorder prediction 520 539 - -
Pumo6g03092 539 Pfam Leucine rich repeat 150 207 IPR001611 GO:0005515
Pumo6g03092 539 Gene3D Ribonuclease Inhibitor 80 242 IPR032675 -
Pumo6g03092 539 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 492 - -
Pumo6g03092 539 Gene3D Ribonuclease Inhibitor 243 388 IPR032675 -
Pumo6g03092 539 MobiDBLite consensus disorder prediction 523 539 - -
Pumo6g03092 539 FunFam Leucine-rich repeat extensin-like protein 1 80 241 - -
Pumo6g03092 539 FunFam Leucine-rich repeat extensin-like protein 5 242 381 - -
Pumo6g03092 539 SUPERFAMILY L domain-like 80 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03092 Pumo-Chr6 73321885 73323504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03092 21 397 Leucine-rich Repeat extension Gene Families AT3G24480 74.868 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03092 - - gmx:106799218 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03092 6 73321885 73323504 Pumo6g03092 6 73321885 73323504 ECH