Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03089 ATGGCGAGTCGGATGAAGGAAGATGAGAAGAACGAGCGCGTGATTCGAGGTCTTCTCAAGCTTCAACATAATCGCAGATGCATTAACTGCAACAGTCTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACGAACTGCAGTGGAATACACCGGGAATTCACTCATCGAGTAAAATCAGTTTCAATGGCTAAGTTTACTTCACAAGAAGTTAGTGCGCTTCAAGAAGGAGGGAATCAGCGTGCAAAAGAAATTTATTTTAAAGACTGGGATGCACAACGTCATTCTTTCCCCGATAGCAGTAATGTTGACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGGTTCACTGGAGACAAGGCCAATGACAAACCACCAAGAGCCAAGCCGGGTGACAAAGATGATTTCTATCAAGGAGGATCTAGAAGCCCTCCCTATGAGGACACATATGAACGTCGCTATAGTGACAGATCTAGTCCAGGCGGAAGAAGTCCAGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAAAAGAAGTCCTGGTCGTCCTCCAATAATAAATGATTGGCGTCGTGAAGATCGTAGAATATCAGAAGGAGATTATAAGTTGGAAAGCCAATCTCCTGAGCAAGCCAAAGATGTGGATTCTTCAAGCCCACCTGTGGTTCGACCTGTTAGAGATATTTTGGGAGAAAATGTAGTGCCTCTTCGGATAAGTGAACCACCCAAACCGAACAGTGGAAGACCTGCTGATAGCTCAGCATCAACACAGAGAACTGCATCTTCCAGTAGCTTGGCTTCTGGCAATGAAAACCCAGTGGATGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTCCAGTAGCTCCAGCAATTCCTCAAGCCCAACAAACTACTGTGCCTCAACCTGTTGTGCAACCAGCAAATTCTAGTAATGACAATTGGGCCTCTTTTGATGTTGCTCCTGCAGCACAAGCAACTCCAAGCTCCTCAAATTTAAATCCACTTGAATCAATGTTGTCCCAATTGTCTGTGCCAGCATCTTTACCTGCTCAAGTTTCTGGAGTCCAAGGACCTATTCCAGTATCATCTCCTGGATTTACATCTTTCCCACCCAGCAATGCTTCAGTACCATCTCCTGGATTTACATCAGTATCACCTCTTAATAATGCAGGACAGTGGGCCAATTTGCAGCAGCAGCAACCATTGTTCCCTGCTGCTGTCAGTCAGTCTACTACACAACAATTTACACCACCATTAGCTGGAGCAGCAAATAATCAGCCATGGAATGTACCTTCTGCACCCACAGTGCAAGGGCATCCAAGCACACCAATGCCACATACATACCATCATGCCTCAAAACCTGCCAATGAGGCTATACCCAGTGTTGTTTCACAACCTCCTCCTACAGAAGTTAAAGCAAGTGGAAGGAAAGAACTTCCCGAGGATCTGTTCACTGTAAAATATTCTTCCTTCCCTGCTCCAGTTCTAGGTTGGCAAATGGGTGTTCCCCATGGCATGGGTATCTCAATGCAATACAATAATGTGGTGCCTGTGCCAAGTTTTCCACAGCCATCAAAGTCAACAAATCCGTTTGATGTCAGCAGTGAACCTACCCCAAATCAAGCCCCAACTTTTCCTTCGATGTCATCCTTGCAAGGTGCCCTGCCTGGTGTACCACCTGCAGGCACAGTGCACCCTTCAAGCATGGGTAATCCAACACATGGCTGGACTCCTCCCCCATCATCATCATTTCCATCAGTTCTGCCTGCACAAGTACAAATGCATGCAACTGCATTGGGACCAAGGGCATATATGGGGCAACAAATGCCGACTAACATGCCAATGCCAAGGCAAGAAGTTGGGAATTTTGGTAACCAAGGAGCTGTTTTCGGCTTGTCAAATCCAGATCAGCAGCTTAGCAGTAGGTTCTCAAACACTCCCACCTCTAACTCATTCCCTACAGGAGGGAACCCATTCGGATAA 2025 0.4568 MASRMKEDEKNERVIRGLLKLQHNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNQRAKEIYFKDWDAQRHSFPDSSNVDRLRDFIKHVYVDRRFTGDKANDKPPRAKPGDKDDFYQGGSRSPPYEDTYERRYSDRSSPGGRSPGYDQESRQYGDYKRSPGRPPIINDWRREDRRISEGDYKLESQSPEQAKDVDSSSPPVVRPVRDILGENVVPLRISEPPKPNSGRPADSSASTQRTASSSSLASGNENPVDVKLETTKSLIDFDADPEPPVAPAIPQAQQTTVPQPVVQPANSSNDNWASFDVAPAAQATPSSSNLNPLESMLSQLSVPASLPAQVSGVQGPIPVSSPGFTSFPPSNASVPSPGFTSVSPLNNAGQWANLQQQQPLFPAAVSQSTTQQFTPPLAGAANNQPWNVPSAPTVQGHPSTPMPHTYHHASKPANEAIPSVVSQPPPTEVKASGRKELPEDLFTVKYSSFPAPVLGWQMGVPHGMGISMQYNNVVPVPSFPQPSKSTNPFDVSSEPTPNQAPTFPSMSSLQGALPGVPPAGTVHPSSMGNPTHGWTPPPSSSFPSVLPAQVQMHATALGPRAYMGQQMPTNMPMPRQEVGNFGNQGAVFGLSNPDQQLSSRFSNTPTSNSFPTGGNPFG 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03089 674 Gene3D Arf GTPase activating protein 1 132 IPR038508 -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 535 600 - -
Pumo6g03089 674 PANTHER ARFGAP/RECO-RELATED 1 674 IPR044820 GO:0005096
Pumo6g03089 674 MobiDBLite consensus disorder prediction 292 329 - -
Pumo6g03089 674 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 123 280 - -
Pumo6g03089 674 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Pumo6g03089 674 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Pumo6g03089 674 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Pumo6g03089 674 MobiDBLite consensus disorder prediction 191 216 - -
Pumo6g03089 674 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 420 466 - -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 420 456 - -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 305 329 - -
Pumo6g03089 674 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Pumo6g03089 674 MobiDBLite consensus disorder prediction 635 674 - -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 641 674 - -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 253 280 - -
Pumo6g03089 674 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Pumo6g03089 674 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Pumo6g03089 674 CDD ArfGap_AGFG 12 122 - -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 123 142 - -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 535 565 - -
Pumo6g03089 674 MobiDBLite consensus disorder prediction 378 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03089 Pumo-Chr6 73287935 73294657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03089 12 122 C2H2 Transcription Factor Family AT4G21160 31.452 3.98e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03089 - - gmx:102669541 1194.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03089 6 73287935 73294657 Pumo6g03089 6 73287935 73294657 ECH