Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03083 ATGGATTTAGAAGACAAGTTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCATCTAGTGCACAAAGTACTCCAGAAAAAAATGGCCATTCAGATGATGGTTCAAGAAGTTCAGAACTTCTTCAGGAGTTCCTAAAATCTGGTCCTAAGAAGGAACTTCTACGAACTTGCTTTGATAAGGACAAAAAGAACATTTCTTCAAAAAGCAGGATGACTGAAACTAAGTCAACCAGTAAGATTGTCAAGAAACAGGACCCAAAAAAAGTTTCTGGTGTCAGCAATCAGCCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCTGTGCGGTTTGTACCAGCTCCTGACCCACCTAGTGATTTTGGACATTCAAACTCCTGGATCTGTAAGAATTCTGCCTGCCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCGTGTGGGTTGTCTTGCCATATTGAGTGTGCTCTTCAACACGAAAAAGTAGGAGTTGTTGATCATGGACAACTGATGCAGCTAGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATAGCAAAAGATGCCCGGCGTGTAGATGTACTATGCTACAGGATATATTTGAGCTACAGGCTTTTGTATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAGGCAAAGGCAAAACTAGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAGATGGCACGTGGTATTGTCAGCAGACTCCCTATTGCCAGTGATGTACAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGAGTGGTTGGCCACTGTTCCCAATGTAAATTCAGAATCCAGAGAGGGTTCACTTCCCGCTGCCTGCAAGGTTGTGTTTGAAGAGGTAACAGCTTCCTCAGTCAAAATCATTTTAATTGAAATGTCAAATGCATCTTCTGGGGACATTAAGGGATACAAGCTCTGGTATTACAAGAGTAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTGTTTCCCAAAGCTCAGAGAAGGATTTTGATCTCCAACCTCCAGCCTTGCGCAGAATATACGTTTCGGATTGTATCCTTTACAGATACAGGTGACCTGGGTCATTCTGAGGCTAAGTGTTTCACCAAGAGCATTGAGATATTGGAAAAGAATTCATGTTCATCAGTTGCCGTGAATCATAAAAAGGAGATCCTTCAAACTGAATGCAATTCTTCTGGCTCCAAAATGGAGCCCAATGACACAACGGAAGATTCTGGATTTAAGGTTCGAGACCTTGGAAAAATCTTGCATTTTACTTGGGCTCAAGAACAAGGTTGCTTTGAGGGTTTTTGCTGTGCTGACAAGAGAAATTGCTGTGGGCAAAGTGAAACAATCAAGCCTAGCAATCCACAAGAGCAGTTGCCTTCAGTTTCACGTGGCCTCGATCTAAATGTTGTTTCAGTGCCTGATTTGAATGAAGAACTTACACCTCCGTTCGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATTTAGAGAAAAATTTAGCAAGATCACACGGTAGTGGTGGTTCCCAAACTTGGAATCATGGACCAACTGGAGAAGTGCCAGCTGTTGACTCTCGAGGAGATGCATGTAGGAAAAGGATGACAAGCACAAATGAAGAGACACATGATTGCGACAGCACTTTGATAAATGATTCTCCTTTACGCCCATCTGATGGTCCATTCTCCTTAGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGATCGACAGAACAAGAACGTAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCAAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAATAAGTCTGTGGCATCAAGTTAA 2160 0.4208 MDLEDKFLAKVSGVQSLSSSAQSTPEKNGHSDDGSRSSELLQEFLKSGPKKELLRTCFDKDKKNISSKSRMTETKSTSKIVKKQDPKKVSGVSNQPSRKQHRKGENPVRFVPAPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLYGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNVNSESREGSLPAACKVVFEEVTASSVKIILIEMSNASSGDIKGYKLWYYKSREESHTKDPVCVFPKAQRRILISNLQPCAEYTFRIVSFTDTGDLGHSEAKCFTKSIEILEKNSCSSVAVNHKKEILQTECNSSGSKMEPNDTTEDSGFKVRDLGKILHFTWAQEQGCFEGFCCADKRNCCGQSETIKPSNPQEQLPSVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLEKNLARSHGSGGSQTWNHGPTGEVPAVDSRGDACRKRMTSTNEETHDCDSTLINDSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKSVASS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03083 719 Pfam Fibronectin type III domain 332 413 IPR003961 GO:0005515
Pumo6g03083 719 MobiDBLite consensus disorder prediction 65 86 - -
Pumo6g03083 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Pumo6g03083 719 CDD FN3 332 411 IPR003961 GO:0005515
Pumo6g03083 719 ProSiteProfiles Fibronectin type-III domain profile. 329 426 IPR003961 GO:0005515
Pumo6g03083 719 Gene3D Immunoglobulins 321 424 IPR013783 -
Pumo6g03083 719 MobiDBLite consensus disorder prediction 594 615 - -
Pumo6g03083 719 SUPERFAMILY Fibronectin type III 332 411 IPR036116 GO:0005515
Pumo6g03083 719 MobiDBLite consensus disorder prediction 11 39 - -
Pumo6g03083 719 MobiDBLite consensus disorder prediction 569 620 - -
Pumo6g03083 719 MobiDBLite consensus disorder prediction 12 28 - -
Pumo6g03083 719 MobiDBLite consensus disorder prediction 65 109 - -
Pumo6g03083 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 714 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03083 Pumo-Chr6 73150422 73158047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03083 124 710 PHD Gene Family AT3G24440 49.000 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03083 - - gmx:100780157 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03083 6 73150422 73158047 Pumo6g03083 6 73150422 73158047 ECH
Pumo6g03083 6 73150422 73158047 Pumo6g03083 6 73150422 73158047 PCT