Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03052 ATGTCAGACTTTCAAAGGCAAACTCAGAAACAAGGAATGAAATGTAAGAGAGGAAAAGAGAAAGTTCCAGCCAAAGAAGAAAACATAAACACACTGAGGAAAATTAGAATTGTGTACACTGACCCTGATGCTACAGATTATTCAAGTGAAGAAGATGATAAGTTTTTGAGCAATGGCTATCAGTTAAATGGTTGTTCAAAGCGGGTTGTCAAGGAAATTTCACTTCCATGCATGCCAAGCAAATTACATGCAGAGAATTCTTCACAAGAAGATGTCAACAGTGAAGAGATCAAAGCAAGTCCAGGCCCTTTTGCAAGTAGGAGGAACAGGAAACCATCAAGCATGTACAGAGGTGTTCCACGTAGGAAATGGGGAAAATATGTGGCAGAAATTAAAGACCCTATTCGAGGGGTCAGAATGTGGCTTGGCACTTTTGATACTGAAAAAGAGGCTGCTATGGCTTATGAGAGAAAGAAGAATGAGTTTGACAGCTCTTTGTTGGCTTTGAGCAAAGGGGATGCATTGGCTTGTGAAAGTGCCAAAGAAAAAGAAGTATTGTTTCATCCATCTCCATCATCAGCCCTTGATGTAAGCACTGCAAAAGCTCCACTAGATGTTGATGATGGTTCAGTCAAAGAAAAGGTCAATGTGGAAACAAATGGTGAAGGAGGAGGCATTGATGTGGAACCAGTTTATAGTGAAGATAATTCAATTCTACATTTGCTAGAGGAACCAGTTGTGCCATCATTGGTTGGTCATGATCTCTATTTGGATGAAGTAGAGAAAGGGGCAATGCTGTTTGGTAATGACTTCTATACTTTCTTAGACAATGACATGAAAGATGGCGCTATGTGGAATGTGGAACATGGGAAAGACACCACCCTTCCCCCTGTAGACAGTCCTTTTGATGAGTTAGCTTGGATTGATGAAACTCTAAATTGGGAATGTGCCTAA 954 0.4057 MSDFQRQTQKQGMKCKRGKEKVPAKEENINTLRKIRIVYTDPDATDYSSEEDDKFLSNGYQLNGCSKRVVKEISLPCMPSKLHAENSSQEDVNSEEIKASPGPFASRRNRKPSSMYRGVPRRKWGKYVAEIKDPIRGVRMWLGTFDTEKEAAMAYERKKNEFDSSLLALSKGDALACESAKEKEVLFHPSPSSALDVSTAKAPLDVDDGSVKEKVNVETNGEGGGIDVEPVYSEDNSILHLLEEPVVPSLVGHDLYLDEVEKGAMLFGNDFYTFLDNDMKDGAMWNVEHGKDTTLPPVDSPFDELAWIDETLNWECA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03052 317 CDD AP2 114 157 IPR001471 GO:0003700|GO:0006355
Pumo6g03052 317 SMART rav1_2 115 174 IPR001471 GO:0003700|GO:0006355
Pumo6g03052 317 Gene3D AP2/ERF domain 115 165 IPR036955 GO:0003700|GO:0006355
Pumo6g03052 317 MobiDBLite consensus disorder prediction 84 117 - -
Pumo6g03052 317 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Pumo6g03052 317 Pfam AP2 domain 116 161 IPR001471 GO:0003700|GO:0006355
Pumo6g03052 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 162 - -
Pumo6g03052 317 SUPERFAMILY DNA-binding domain 114 162 IPR016177 GO:0003677
Pumo6g03052 317 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Pumo6g03052 317 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Pumo6g03052 317 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03052 Pumo-Chr6 72716181 72717134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03052 32 181 AP2-EREBP Transcription Factor Family AT1G68550 39.744 7.19e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g03052 AP2 3.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03052 - - gmx:102661579 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03052 6 72716181 72717134 Pumo6g03052 6 72716181 72717134 ECH