Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03048 ATGCGCTTGAGCTGCAATGGTTGCCGCGTCCTCCGCAGAGGGTGCACCCCTGAGTGCCCCATTCGCACCTCCCTTCAATCGATCAATTCTCCTAATTCCCAATCCAACGCCACCCTCTTCCTTGCCAAGTTCTATGGTCGCCAAGGCCTCCTCAACCTCCTCACAAACGCTCCCTCACAACTCCAACCAGCCGTATTCAAATCTTTGCTTTACGAAGCTTGCGGTCGAATGGTGAACCCGGTTTTCGGCTCGACCGGGTTGCTCTCAACCGGGAATTGGCATTTATGTGAAGCCGCAGTCAAAGCCGTTCTTAGTGGCGCGCCGATTCAGCAGGCTCCTTTGGACGGCGCCGCGAGCCTGCAGCTCGAGTCTTGCGATATTCGCCACGTGGCAAAGAGTGATAAATTGTGTGGCTCTGACACGCTTCGCAAGGTGAAGTCTCGCACCAGCAAATTCAAGCGCCGCGCCGTGAAGCCCAGAGTTGAGTCAGTTGTGACTGAGTTGGCTGAAAGCGAGTTTGATGGTCATGGTTCGGTGAGTCGTGACTCGGGGTCTGGGGTGACACGGACGAGTGAGAACAAAATCGTTGGAGGTGAAGCCGATAGCGGCTCCGTTGAGAGTGTGAAGCCGGCGCGAGCCGATGATGGAGAAATGGAGCTTCAGTTGACTTTAGGGTGGGGTCCAGTGAAGAGACCAACGGCTTAG 705 0.5574 MRLSCNGCRVLRRGCTPECPIRTSLQSINSPNSQSNATLFLAKFYGRQGLLNLLTNAPSQLQPAVFKSLLYEACGRMVNPVFGSTGLLSTGNWHLCEAAVKAVLSGAPIQQAPLDGAASLQLESCDIRHVAKSDKLCGSDTLRKVKSRTSKFKRRAVKPRVESVVTELAESEFDGHGSVSRDSGSGVTRTSENKIVGGEADSGSVESVKPARADDGEMELQLTLGWGPVKRPTA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03048 234 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Pumo6g03048 234 MobiDBLite consensus disorder prediction 173 216 - -
Pumo6g03048 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 224 - -
Pumo6g03048 234 MobiDBLite consensus disorder prediction 181 197 - -
Pumo6g03048 234 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03048 Pumo-Chr6 72650793 72652162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03048 1 231 AS2 family AT3G02550 43.096 5.18e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo6g03048 LOB 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03048 - - gmx:100802646 399.823