Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03044 ATGGCAACGGGGCGGGTCGGGGGCGGATTTGGCTCTCCCCGTCCCCATCCCCGCAAAAGGCGGGGCGGGTACGGGTTCGGGTATAAAAGATGCGGGTTTAATATTTTAATACCCATCCCCATTTCCGTCGGGTTTTATCGGGTTCGGGTATACCCGCGGGGGGTATCAAAAGCTGCAGCTTGGTTTCATTCATCAAAATATCTGATGGAGGAAAATCTACCTCCTGGATTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATGTTATCTTACAAGGAAGGTTTCTGATTCTAGCTTCACATCCAAAGCTATAGCACTTGTTGATCTCAACAAGTCTGAACCTTGGGACCTCCCAGGTAAGGCCTCAATGGGGGAGAAAGAGTGGTACTTCTTTAGCTTAAGAGACCGAAAGTATCCAACGGGACTTCGAACAAACCGAGCCACTGAATCAGGCTATTGGAAAACCACAGGGAAAGACAAGGAAATTTTTTGTTCTGGGGTTTTGGTTGGAATGAAGAAAACCCTAGTCTTTTATAGGGGTAGAGCTCCAAGGGGCGAGAAAAGCAACTGGGTCATGCACGAATATAGACTAGAAAACAAGCATCACTTTAGACCTTCCAAGGACGAATGGGTGGTTTGCAGGGTTTTCCAAAAGAGCTTACAAGTGAAAAGACCACAGCAAACACCCTCCTCACAACCAGAGTCCCCATGTGACACAGCCTCAATGGTCAATGAATTTGGTGATGTTGAGCTTCCTAATCTAAATAGCATTGCAAATTCATCATCAGGTGGACTCACTAACAACATTTCAGGACAAGCTTTCAATGCTGATCTCAGTAATTGTGTCAACACAAGTATGAACTTGACCATGAATTGGCCAGTAGTTGCAAGTGAGGTTCAAGTTCCCACTCTTCCATCACTCCCATGGCCTTCTGGGTTGCTAAATCCAACTATTTCTGTAAATTCCTTGCTTCTCAAGGCATTGCATCTTAGGAGTTATCAACAAAGAGAAGCAGCAGCAGCAGCAGCAGCAGTAGCTACAGATCATTTAATTGCATCATATATGCCTCAAGGAGTGTCCCATGTTGGAACTGACCTAATTAGTTCAAATCTCACTGCCTCTTCTTCTTCTAAAGTTTTAGAATGTATTCCACAGCAGCAACAGCAGGAGCATCCATTCAACTTGGACTCCATTTGGTGA 1203 0.453 MATGRVGGGFGSPRPHPRKRRGGYGFGYKRCGFNILIPIPISVGFYRVRVYPRGVSKAAAWFHSSKYLMEENLPPGFRFHPTDEELITCYLTRKVSDSSFTSKAIALVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFCSGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHFRPSKDEWVVCRVFQKSLQVKRPQQTPSSQPESPCDTASMVNEFGDVELPNLNSIANSSSGGLTNNISGQAFNADLSNCVNTSMNLTMNWPVVASEVQVPTLPSLPWPSGLLNPTISVNSLLLKALHLRSYQQREAAAAAAAVATDHLIASYMPQGVSHVGTDLISSNLTASSSSKVLECIPQQQQQEHPFNLDSIW 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03044 400 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 69 280 - -
Pumo6g03044 400 SUPERFAMILY NAC domain 62 219 IPR036093 GO:0003677|GO:0006355
Pumo6g03044 400 Pfam No apical meristem (NAM) protein 74 198 IPR003441 GO:0003677|GO:0006355
Pumo6g03044 400 FunFam NAC domain-containing protein 100-like 82 223 - -
Pumo6g03044 400 Gene3D NAC domain 82 223 IPR036093 GO:0003677|GO:0006355
Pumo6g03044 400 ProSiteProfiles NAC domain profile. 73 219 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03044 Pumo-Chr6 72583276 72588347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03044 69 400 NAC Transcription Factor Family AT3G18400 56.305 5.93e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g03044 NAM 1.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03044 - - gmx:100780030 583.948