Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03032 ATGAGACTAGCCATGTCTACTCCTTCAAAGAGCATAGTCTGTTCCAGTGAGGATGATTATGAACTTAGAAGAGGGCCATGGAGTGTTGAAGAGGATGATCTTCTCACCAATTACATTGCCAATCATGGGGAAGGGAGATGGAATTTGCTTGCTACACGTTCAGGATTAAGGAGAACAGGAAAGAGTTGCAGATTGAGATGGCTCAATTATCTAAAGCCAAATGTTAAGAGAGGAAATTTAACCTCAGAAGAGCAGCTTTTGATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCGCAACAGCTGCCAGGCAGAACAGACAATGAAATCAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCAAAATATGTGAAATTTGAGGCACATAGAAGAACAGGATTTCTAGAATTTGTCAAGGGTCTACAGATGACAAGATGTCTTCATAAAGCACAAGAGTCATCATCATCTCCTTCAGCCATGTCAATCCAAGACCAAGCAATTCCTTTACCTTTTGATGGTGTCACTGTTCCTCATTATTCATCATTTGGGATTGGGACAACACCAACAACAGAAATCACTTGCCAGGGAGGTCTCAATCATTTGAATCAGCATGAGCAGAACTCAGACTCTGAACACAACAATGGTCCATGCATCTCCTCTTCAGAATCAGCAAATATCCCAAATATGAGTCAGCCTTTGGGATACACCACTAGTCAATTTCAGGCCTTAGATAACTGTGACTTTGGCATCTATTCATATGATGGTTACAGCATAAATAACAATGCCTATGATATGGATGCCTTGAACATGACAACCACAATGGTTGCTGATGAGAATCTGGAACTCCCAGTGATTGATTGCCAAATATCAGAAACCAATTGGCTAAACAAGGAATTTGCATGTAGCACATGGAGCATGGATGAATTATGGCAATTTAGGAACATACAAAGATGA 969 0.4045 MRLAMSTPSKSIVCSSEDDYELRRGPWSVEEDDLLTNYIANHGEGRWNLLATRSGLRRTGKSCRLRWLNYLKPNVKRGNLTSEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQAKYVKFEAHRRTGFLEFVKGLQMTRCLHKAQESSSSPSAMSIQDQAIPLPFDGVTVPHYSSFGIGTTPTTEITCQGGLNHLNQHEQNSDSEHNNGPCISSSESANIPNMSQPLGYTTSQFQALDNCDFGIYSYDGYSINNNAYDMDALNMTTTMVADENLELPVIDCQISETNWLNKEFACSTWSMDELWQFRNIQR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03032 322 MobiDBLite consensus disorder prediction 205 228 - -
Pumo6g03032 322 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Pumo6g03032 322 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Pumo6g03032 322 CDD SANT 81 120 IPR001005 -
Pumo6g03032 322 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 224 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo6g03032 322 SMART sant 23 73 IPR001005 -
Pumo6g03032 322 SMART sant 76 124 IPR001005 -
Pumo6g03032 322 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Pumo6g03032 322 Gene3D - 24 76 - -
Pumo6g03032 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Pumo6g03032 322 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Pumo6g03032 322 CDD SANT 26 71 IPR001005 -
Pumo6g03032 322 Gene3D - 81 123 - -
Pumo6g03032 322 FunFam Myb transcription factor 24 76 - -
Pumo6g03032 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Pumo6g03032 322 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Pumo6g03032 322 FunFam MYB transcription factor 80 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03032 Pumo-Chr6 72453396 72454684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03032 19 262 MYB Transcription Factor Family AT1G68320 45.703 1.69e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo6g03032 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03032 K09422 - gmx:100804227 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03032 6 72453396 72454684 Pumo6g03032 6 72453396 72454684 ECH