Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03030 ATGAGCCTCCTGCGCAGGTTGTGCCCATGTTTGCGCAAGGGCGGCGCAGCCTCCGACGACGGCGGCGACGACGACGATCCGAACTGCCCCGGCGACTCCTTAGACCTAATCTTCGACCTCCACACTCTCCAACTCGCCACCAACTTCTTCTCCCCCCTCAACCAGCTAGGTCATGGAGGCTTTGGTCCTGTCTTCAAGGGATTGATGCCAAATGGTCAAGAAGTGGCGGTTAAGAAGCTGTCATTGGATTCTAGGCAAGGAGTTAGAGAATTCACCAATGAAGTCAGGCTATTACTCAGAATTCAGCACAAGAACTTGGTTACATTACTGGGTTGTTGTCCAGAAGGGCCTGAAAAGATGCTTGTCTATGAGTATCTGCCAAACAAAAGCCTTGATCACTTTCTGTTTGATAAGAGGAGGTCTTCATCTTTGAACTGGGCAACGCGATTTAGAATAGTTACAGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAGGCCCCAGAAAGAATTATTCACAGGGACATTAAAGCTAGTAACATATTGCTGGATGAGAAATTAAATCCGAAAATTTCGGATTTTGGTTTGGCAAGGTTGTTTCCTGGGGAGGACACTCATGTGCAGACATTTAGGATTTCCGGTACACATGGTTACATGGCCCCTGAATATGCATTGCGTGGATATCTGTCTGTGAAGACAGATGTTTTCAGTTATGGAGTTCTGGTGTTGGAAATAGTTAGTGGGAGAAAAAATCATGATGTGCGGCTTGGTTCAGAAAAGGCAGATCTCTTGAGCTATGCATGGTCGCTTTATCAAGCAGGCAAGATAATGGACTTAATTGACCCTACCCTTGGTAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTAGGTTTGTTGTGCTGTCAAGCAAGCATAATTGAAAGACCTGACATGAATTCTGTTCATCTCATGCTCTCAAGTGATTCCTTCACTTTGCCAAGACCAGGAAAACCAGGAATTCAAGGTCGTGTAGGACGTTGGAATACAACCACAACTTCTGCTTTGACCAATACCAATGCTAGTAGTGCTACCAGGGCCTCAGGTGGTAGTAGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATATCTACCTCTTCTTTTGATGAAGGAAGATGA 1161 0.4539 MSLLRRLCPCLRKGGAASDDGGDDDDPNCPGDSLDLIFDLHTLQLATNFFSPLNQLGHGGFGPVFKGLMPNGQEVAVKKLSLDSRQGVREFTNEVRLLLRIQHKNLVTLLGCCPEGPEKMLVYEYLPNKSLDHFLFDKRRSSSLNWATRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNHDVRLGSEKADLLSYAWSLYQAGKIMDLIDPTLGKYNGDEAAMCIQLGLLCCQASIIERPDMNSVHLMLSSDSFTLPRPGKPGIQGRVGRWNTTTTSALTNTNASSATRASGGSSSFVEDYSRNSISTSSFDEGR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03030 386 CDD STKc_IRAK 56 320 - -
Pumo6g03030 386 Gene3D Transferase(Phosphotransferase) domain 1 126 326 - -
Pumo6g03030 386 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 35 354 - -
Pumo6g03030 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Pumo6g03030 386 ProSiteProfiles Protein kinase domain profile. 50 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03030 386 SUPERFAMILY Protein kinase-like (PK-like) 35 320 IPR011009 -
Pumo6g03030 386 Pfam Protein tyrosine and serine/threonine kinase 54 251 IPR001245 GO:0004672|GO:0006468
Pumo6g03030 386 MobiDBLite consensus disorder prediction 351 386 - -
Pumo6g03030 386 Gene3D Phosphorylase Kinase; domain 1 31 125 - -
Pumo6g03030 386 SMART serkin_6 50 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03030 386 FunFam Cysteine-rich receptor-like protein kinase 41 126 326 - -
Pumo6g03030 386 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 32 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03030 Pumo-Chr6 72441685 72445119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03030 36 369 Receptor kinase-like Gene Family AT4G21410 50.296 7.00e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo6g03030 PK_Tyr_Ser-Thr 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03030 - - gmx:100790304 662.144