Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03028 ATGGAAACCCCTCAGAACCCCGCCGGTAGACGAAGCTTGAAGCGCAAGCTTGAACAAGATTCCCAACAGCCTCGCCCAAATGTCTCTGTTGAGATTCTCCATCAAGTTTCTCTCCTCAATTCCGCCTCCTCGGATCGCACCGCTGTGAAGAGTGCCGTCTTCGCCCTCGTTACACTTGTCAGAAATGCTGTCCTCGATGAGCGCATTGGTCCGTGGCCGACTCTCCCCGAAGGCCTCGTGGACACTATAGTTAACTGTTGTGCTGTGCCTGCTCTGGTGAACAATCTTCGGCCACCACCACCAGAGGCGGTGAAAGATGACTGGGTTGCCCTTGCCCAACCTTGTCAGCATGAGGTGGAGGAAGGATGTGCTTTAATCCTTGGCTGTATTGCCACTAAAACAGAGCATCAGCAACTCATTATAGATGCTGGAGCCTTGCCCTGTCTTGTAGATTTGTTAAGGAAGCACAAGATCAGTACCATTTCTCAACCACTTATTGATCTTCTAAGTAGAGTAGCTGATGCAATAAACCACCTTGCCTATGAAAATACCACCGTTAAGACCCTTGTCAGGATGGAAGGTGGTATACCTCCTCTTGTTGAATTGCTTGAATTCAACGACACAAAGGTACAGGTCGCAGCTGCAATGGCCTTGGGAACTCTTGCTTTTCAGAATGATGACAATAAAAATCAGATTGTTGAACGCAATGGATTACCCACTCTTGTACTAATGCTTCGATCAGAGGATATTATAATACATGGCGTGGCGGTTGATGTGATTATAAAACTGGTCAACTCTTCTCCAAATATTGAGAAAGAAGTTCTTCTAGCTGGGGCTTTACAACCTGTCATTTGCTTACTTCGTTCCTGCTGTTCGAAGATCCAAACAATAGCAGCCTTTTTACTGTGTCAATTTGCAACAGATTCAGATTGCAAGGTTCATATTTCCCAAAGAGGGGCTATTCCACTGTTGGTTGACATGCTTAAGTCTCCAAATGCACTGCTTCAGGAAATGTCAGCTTTTGCACTTGTTAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCATAACGGAGGTATAGAGCCTCTGCTAAATCTTCTTGGCTCAAACAATGCATCCCTCCAACTTCCCGCTGCTTTTGCTCTTTATTATCTTGCTAATAATGAGGACATTGTTGCAGATATTATCAAGGCTGGTGGGTTTCAAAAACTGAAGGATGGACATTTCGAAGAACAACCTACTAAAGAGGGTGTAGAAACCACATTAAAAAGATTAGAGGAGAAGATGCAAGGACGAGTATTGAAACACCTAATATATCTTATGCGCTTTGCGGAAAAAGGGGTTCAAAGACGTGTAGCTATTGCTCTTGCTTACTTATGTTCTCCTTATGATCGTAAAACTATATTCATTGACAATAATGGTAATAAATTATTTGTACACTTTATAATTTCTCACTCACATTACTTGAAAAGTATTTTCAAGCTATATGCTGCAAAATATTCAGGATTAGAATTGTTGCTGGATATTCTTGTATCTCCCCATGTAAAGCAGAAGGGCAATGCTTCAGCGGCACTTCAGAAATTGGCTGCCAAAGCCAGTTCTCCTGTCTCTCTTTTTGACGCTGTTCCTCCATCACCAACTCACCAGGATATTTCAGTGAAAAATGTTTCACTGAAATACAAGATGTCAGAGGATTTCAATGATACTACATTGAAACATGCATGTATATTGTTTATGCTGGAGAAATCTGATGAACTGAGGTCGAAACGATGGTATTGTCGCATGGTTCGACGCATTGTACCAGCCATACGTATATTCTATTTAACTTTACTTACCAAGTCTCATCCAACTGAGTCGTGA 1866 0.4271 METPQNPAGRRSLKRKLEQDSQQPRPNVSVEILHQVSLLNSASSDRTAVKSAVFALVTLVRNAVLDERIGPWPTLPEGLVDTIVNCCAVPALVNNLRPPPPEAVKDDWVALAQPCQHEVEEGCALILGCIATKTEHQQLIIDAGALPCLVDLLRKHKISTISQPLIDLLSRVADAINHLAYENTTVKTLVRMEGGIPPLVELLEFNDTKVQVAAAMALGTLAFQNDDNKNQIVERNGLPTLVLMLRSEDIIIHGVAVDVIIKLVNSSPNIEKEVLLAGALQPVICLLRSCCSKIQTIAAFLLCQFATDSDCKVHISQRGAIPLLVDMLKSPNALLQEMSAFALVRLAQDSHNQAGIAHNGGIEPLLNLLGSNNASLQLPAAFALYYLANNEDIVADIIKAGGFQKLKDGHFEEQPTKEGVETTLKRLEEKMQGRVLKHLIYLMRFAEKGVQRRVAIALAYLCSPYDRKTIFIDNNGNKLFVHFIISHSHYLKSIFKLYAAKYSGLELLLDILVSPHVKQKGNASAALQKLAAKASSPVSLFDAVPPSPTHQDISVKNVSLKYKMSEDFNDTTLKHACILFMLEKSDELRSKRWYCRMVRRIVPAIRIFYLTLLTKSHPTES 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03028 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
Pumo6g03028 621 SUPERFAMILY ARM repeat 195 530 IPR016024 -
Pumo6g03028 621 Gene3D - 254 543 IPR011989 -
Pumo6g03028 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 194 IPR000225 GO:0005515
Pumo6g03028 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 361 IPR000225 GO:0005515
Pumo6g03028 621 SMART arm_5 183 223 IPR000225 GO:0005515
Pumo6g03028 621 SMART arm_5 308 348 IPR000225 GO:0005515
Pumo6g03028 621 SMART arm_5 133 174 IPR000225 GO:0005515
Pumo6g03028 621 SMART arm_5 267 307 IPR000225 GO:0005515
Pumo6g03028 621 SMART arm_5 349 389 IPR000225 GO:0005515
Pumo6g03028 621 SMART arm_5 225 265 IPR000225 GO:0005515
Pumo6g03028 621 MobiDBLite consensus disorder prediction 1 26 - -
Pumo6g03028 621 Gene3D - 29 165 IPR011989 -
Pumo6g03028 621 SUPERFAMILY ARM repeat 45 156 IPR016024 -
Pumo6g03028 621 Pfam Armadillo/beta-catenin-like repeat 189 222 IPR000225 GO:0005515
Pumo6g03028 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 237 IPR000225 GO:0005515
Pumo6g03028 621 Gene3D - 166 253 IPR011989 -
Pumo6g03028 621 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 551 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03028 Pumo-Chr6 72399942 72405671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03028 196 461 U-box Gene Family AT1G23030 28.520 3.92e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03028 - - gmx:100783124 574.318