Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03027 ATGGAACACCAAACAGATTCCCAACAACCTCATCCAAATGTCTCTGCTGAGATTCTCCATCAACTTTCTCTCCTCAATTCCGCCTCCTCGGATCGCGCCGCTCTCAAGAGTGTCATGTTGGCCCTCGTTAAACTTGTCGAAAATGCTACCCTCCACAAGGACGACAACAGCATTGGTTTTTGGTCGAATCTCCCAGGGGACCTCGTGGACACTATAGTGAACTCTTGTGCTGTGCCTGCTCTGGTGAAGAATCTTCGGCCAGCACCACAAGAGGCCGATGATGACGGTGACTACGAGGTGGAGGAAGGATGTGCTTTAATCCTTGAGCGTATTGCCACTAAACCAGAGTATCAGCAACTCATTATAGATGCTGGAGCCTTGCCCTGTCTTGTAGATTTGTTAAGGAGGCACAAGATCAGTACCATTTCTCAACCACTTATTGATCTTCTAAGTAAAGTAGCTGATGCAATAAACCATCTTGCCTATGAAAATTACACCATTAAGACCCTTGTCAGGAAGGAAGGTGGTATTCCTCCTCTTGTTGAATTGCTTGAATTCAATGACACAAAGGTACAGGTCGCAGCTGCAATGGCCTTGGGAACTCTTGCTTTTCAGAATGATGACAATAAAGATCAGATTGTTGAATGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCAGAGGATATTAAAATACATGGTGCGGCGGTTGATGTGATTAGAAAACTACTGGTCAACTCTTCTCCAAATATTTTGAAAGAAGTTCTTCTAGCTGGGGCATTACAACCTGTCATCTGTTTACTTAGTTCCTGCCTTTCGGAGATCCAAACAACAGCAGCCTTTGTACTATGTCAATTTGCAACAGATTCAAATTGCAAGGTTCATATTTCCCAAAGAGGGGCTATTCCACTATTGGTTGACATGCTTAAGTCTCCAAATGCACTACTTCAGGAAACGTCAGGTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCATTATGGAGGTATAGAGCCTCTGCTAAATCTTCTTGACTCAAACAATGCATCCCTCCAACTTCCCGCTGCTTTTGCTCTCTATGGTCTTGCTAAAAATGAGGAAATTGTTGCAGATATTATTAAGGCTAGTGGGTTTCAAAAACTGAAGGATGGGCATTTCGAAGATGAACTTGTTAAAGTGTACGTACGAAGCACATTAAAAAGATTAGAGGAGAAGATGCAAGGACGAGTATTGAAACACCTAATATATCTAATGCGTTTTGCGGAAAAAAGGGTTCAAAGACGTGTAGCTATTGCTCTTGCTTATTTATGTTCTCCTTATGATCATAAAACTATATTCATTGATAATAATGGATTAGATTTGCTGCTGGATATTCTTCAATCTCCAAGCATAAAGCAGAAAGGCGATGCTTCAGCGGCACTTCACAAATTGGCTACCAAAGCCAGTTCTCATGTCTTTCTTTTTGACCTTGCTCCTCCATCACCAACTCACCAGGATATTTCAGTGAAAGATGTCTCAGTAACGTACAAGATGTCGAAGGATTCCAATGATACTACATTAAAACATGCATGTATATTGTTTATGTTGGAGAAATTTGATGAACTGAGGTCGAAACCATGGTATTGTCTGATTCGAGGCATTGTACCAGACATACGTATGTTCTTCTTAACTTTACTTATCAATTCCCATCCAGCTGACTCGTGA 1725 0.4174 MEHQTDSQQPHPNVSAEILHQLSLLNSASSDRAALKSVMLALVKLVENATLHKDDNSIGFWSNLPGDLVDTIVNSCAVPALVKNLRPAPQEADDDGDYEVEEGCALILERIATKPEYQQLIIDAGALPCLVDLLRRHKISTISQPLIDLLSKVADAINHLAYENYTIKTLVRKEGGIPPLVELLEFNDTKVQVAAAMALGTLAFQNDDNKDQIVECNALPTLVLMLRSEDIKIHGAAVDVIRKLLVNSSPNILKEVLLAGALQPVICLLSSCLSEIQTTAAFVLCQFATDSNCKVHISQRGAIPLLVDMLKSPNALLQETSGFALGRLAQDSHNQAGIAHYGGIEPLLNLLDSNNASLQLPAAFALYGLAKNEEIVADIIKASGFQKLKDGHFEDELVKVYVRSTLKRLEEKMQGRVLKHLIYLMRFAEKRVQRRVAIALAYLCSPYDHKTIFIDNNGLDLLLDILQSPSIKQKGDASAALHKLATKASSHVFLFDLAPPSPTHQDISVKDVSVTYKMSKDSNDTTLKHACILFMLEKFDELRSKPWYCLIRGIVPDIRMFFLTLLINSHPADS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03027 574 Gene3D - 67 249 IPR011989 -
Pumo6g03027 574 Gene3D - 250 569 IPR011989 -
Pumo6g03027 574 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 175 210 IPR000225 GO:0005515
Pumo6g03027 574 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 125 175 IPR000225 GO:0005515
Pumo6g03027 574 Pfam Armadillo/beta-catenin-like repeat 206 244 IPR000225 GO:0005515
Pumo6g03027 574 Pfam Armadillo/beta-catenin-like repeat 170 203 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 164 204 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 290 330 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 331 371 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 206 246 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 249 289 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 114 155 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 446 486 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 65 113 IPR000225 GO:0005515
Pumo6g03027 574 SMART arm_5 403 445 IPR000225 GO:0005515
Pumo6g03027 574 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 342 384 IPR000225 GO:0005515
Pumo6g03027 574 SUPERFAMILY ARM repeat 24 150 IPR016024 -
Pumo6g03027 574 SUPERFAMILY ARM repeat 153 487 IPR016024 -
Pumo6g03027 574 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 505 IPR044282 -
Pumo6g03027 574 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 343 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03027 Pumo-Chr6 72391263 72395971 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03027 259 488 U-box Gene Family AT2G23140 26.087 1.98e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03027 - - gmx:100783124 566.229