Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03024 ATGGCGACGCCGCTGACGGGGCTGAACGGCGGCGGCGGCGGAGTGGCGGTGCTGTCGAATCCGGTGAGCAAGGTAGATTCCTCCGCCAATGGCGGCGGCGGCTTCGGCCGGTCGCTGTCGGAGTCGCCAATTCTGATATTCTCGTTCTTCCACAAGGCGATTCGGAACGAGCTCGACGCGCTGCACCGATTGGCGATGGCGTTCGCCACCGGAAACTGCTCCGACATCCAGCCCCTCTTCCAACGCTACCATTTCCTCAGATCGATGTACAGACACCACTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAGACATATTCCCTTGAACACCAGGGTGAAAGTGATCTTTTTGATCATCTATTTGATCTGTTAAACTCTTCCGTCCATAATGACGAAAGTTTCCCAAAAGAGTTAGCATCCTGCACAGGAGCTCTGCAGACGTCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCTCTTGAGGAACATGCATCTTTAGTTTGGCAGTTTCTCTGCAGTATTCCTGTGAATATGATGACAGAATTTCTTCCATGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGGAAGTGCTTAAGCAAGATAGTGCCGGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTAGTGCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTGCGATGTAGTCCTAATCCTTTAACCCATCAGAATGGGAAAATAAAATGTGCATGTGAGTCCACAGCAACTGGGAAAAGGAAATATTCTGGATCTAGCATAGATGTTTCTGATACCATGAGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAATGAGATAGCAGCACAGACTAGAAAGATACAACTCTCTGGAGATTTTACTAACCTGTCAGCTTTCAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAAAGTTTTCTTTCTTACAAGAACATGCTGAAGAAGAAAGCCAATTTAATGAGTTCCGGTCTTTGATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATATTGGAAACGATACAGAGACACTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCTCGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCTTTGAAATTGATTGAGCGTGTCCTGCCATGGTTGATTGGATCATTAACTGAAGATGAAGCACAGATGTTTTTGAAAAACATGCAATTGGCAGCTCCAGCAATAGATTCTGCTTTAGTTACACTTTTCTGTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTCTGTGTTTGTCGTCAAGTGTGTCAGGTTGCTGTCCGGCCCTGAGATTTACTGATATTGAAGAAAATACTGTTCAATCTTCCTGTACTTCTGCTTCTGCATTGTCTGGTAGAGATTGCTCAGTATTAGCTGAATCAGATGGTACCCAACAAAGATCAGTCAAGCGAAACATATCAGAGGTGCACAAGAATGAAGATGTCTCTAAAACTTCGGAAAATGAAAGTATTCAGAAACATTGTTGTAGTGCCCGGTCTTGTTGTGTGCCAGCTTTAGGAGTTAACAGGAACAATTTGGGGCTGGGTTCACTCTCTACAACCAAGTCCTTACGCTCTTTGTCTTTCACAGCTTCTGCCCCATCCCTTAATTCTAGTCTTTTCATATGGGAAACAGACAACAGCTCATCTGATGTTGGCTCTACAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTATTTAGACATTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTCCGGCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCTGCACTCGAATCCAAAGAGACACTTCATAATGTGAGCCATTCTTACACGCTGGATCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCATGCGTTCTTTCGGAGCTTTCTGTCCTTCATGAAGACTTGCAAAGGACCCATATGTCAGTGGATTTAAGTGAAAATAATTTTGGAATTTCTGATGCCAATGATAGTGATAATATCAAAAAGTACAATGAGCTTGCTACTAAGCTTCAAGGGATGTGCAAATCTATTAGAGTGACCCTTGATCAACATATTTTTAGGGAAGAGCTCGAGCTCTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCGTGGGTAACTTCTGCACTTACACAGGATGAACAGAACAAAATGATGGACACATGGAAACAGGCAACTAAAAACACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAAGTCCTGTATCTACATCACAGACAGAAGCGTCAGAGCGTAGCACTTCTCAAAGAGGTGGTGATTATCAAGAAAGCTTGAACCTGAATGAGCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGTATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAGGTTTATCGCGACTCAACTCTTGATCCAAGGAGAAAGGCATACCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAGGCTCCATCTGGGGAATCTAGTAAACAAATAGAAGGATGCTCACCATCATTTCGAGACTCACAGAAACAAATATTTGGTTGTGAACACTATAAGCGAAATTGCAAGCTTCGAGCTGCTTGTTGTGGCAAGTTATTTACGTGCAGATTTTGTCATGACAATGCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCAGTGCCTAACTATACAGCCAGTTGGGCCTATATGCATGTCACCTTCATGTAATGGACTTACAATGGCAAAGTATTATTGCAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTATCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAGCATCTCACAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGCGACGACTTGTTCACATCAAGTGCAACAGTGAGAGCTTTACCTTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCGTACACTTGTAGCCACTACACATGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGATATTCTCTGCCATGACTGTGATCGAAAGGGCACTTCACGCTTCCACTGGCTATATCACAAATGTGGATATTGTGGCTCATACAATACCCGGGTAATCAAGAGTGAGGCAACAAATTCTAGCTGCCTTTAG 3723 0.4201 MATPLTGLNGGGGGVAVLSNPVSKVDSSANGGGGFGRSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNCSDIQPLFQRYHFLRSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHQGESDLFDHLFDLLNSSVHNDESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEHASLVWQFLCSIPVNMMTEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGRSSANTVENCVDHSQVRCSPNPLTHQNGKIKCACESTATGKRKYSGSSIDVSDTMRTHPIDEILLWHNAIKKELNEIAAQTRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFLQEHAEEESQFNEFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLIGSLTEDEAQMFLKNMQLAAPAIDSALVTLFCGWACKARKDGLCLSSSVSGCCPALRFTDIEENTVQSSCTSASALSGRDCSVLAESDGTQQRSVKRNISEVHKNEDVSKTSENESIQKHCCSARSCCVPALGVNRNNLGLGSLSTTKSLRSLSFTASAPSLNSSLFIWETDNSSSDVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLCDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHEDLQRTHMSVDLSENNFGISDANDSDNIKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLKESPVSTSQTEASERSTSQRGGDYQESLNLNEQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAPSGESSKQIEGCSPSFRDSQKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATLEMMCMQCLTIQPVGPICMSPSCNGLTMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKGTSRFHWLYHKCGYCGSYNTRVIKSEATNSSCL 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03024 1240 Pfam Zinc-ribbon 1171 1228 IPR039512 -
Pumo6g03024 1240 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 693 1236 - -
Pumo6g03024 1240 ProSiteProfiles Zinc finger CTCHY-type profile. 1060 1123 IPR017921 -
Pumo6g03024 1240 CDD Hr-like 46 172 - -
Pumo6g03024 1240 ProSiteProfiles Zinc finger RING-type profile. 1124 1166 IPR001841 -
Pumo6g03024 1240 SUPERFAMILY Zinc hairpin stack 1061 1117 IPR037275 -
Pumo6g03024 1240 MobiDBLite consensus disorder prediction 881 903 - -
Pumo6g03024 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1119 1168 IPR013083 -
Pumo6g03024 1240 Gene3D - 1195 1236 - -
Pumo6g03024 1240 FunFam Zinc finger protein-related isoform 1 1119 1168 - -
Pumo6g03024 1240 Pfam CHY zinc finger 995 1070 IPR008913 GO:0008270
Pumo6g03024 1240 CDD Hr-like 303 432 - -
Pumo6g03024 1240 Gene3D nmb1532 protein domain like 42 192 - -
Pumo6g03024 1240 Gene3D nmb1532 protein domain like 302 450 - -
Pumo6g03024 1240 SMART ring_2 1124 1165 IPR001841 -
Pumo6g03024 1240 SUPERFAMILY RING/U-box 1121 1176 - -
Pumo6g03024 1240 Gene3D nmb1532 protein domain like 646 889 - -
Pumo6g03024 1240 ProSiteProfiles Zinc finger CHY-type profile. 988 1057 IPR008913 GO:0008270
Pumo6g03024 1240 Pfam Ring finger domain 1123 1165 IPR001841 -
Pumo6g03024 1240 CDD Hr-like 652 812 - -
Pumo6g03024 1240 SUPERFAMILY CHY zinc finger-like 989 1052 IPR037274 GO:0008270
Pumo6g03024 1240 Pfam Hemerythrin HHE cation binding domain 650 813 IPR012312 -
Pumo6g03024 1240 Pfam Hemerythrin HHE cation binding domain 51 174 IPR012312 -
Pumo6g03024 1240 Pfam Hemerythrin HHE cation binding domain 300 434 IPR012312 -
Pumo6g03024 1240 CDD RING-H2_Pirh2-like 1123 1166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03024 Pumo-Chr6 72335695 72344942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03024 1 1239 C2H2 Transcription Factor Family AT3G18290 66.958 0.0 1704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03024 6 72335695 72344942 Pumo6g03024 6 72335695 72344942 ECH
Pumo6g03024 6 72335695 72344942 Pumo6g03024 6 72335695 72344942 PCT