Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03023 ATGGAAAACCTTGATTCAGCTGCAAGACCAAGCTTGAAGCGCAAGTTAACTGAAGACCAAACAGATCCTAAGGTGCAGCACCTCGATTCCGAACAACCTGGTTCAAATTTCTCTGCTAAGATTCTCCAACAAGTTTCTCTCCTCACTTCTCCGGACCACGCCGCCGTGAAGAGCGCCATCCTCGTCCTCACCAAACTCGCCAAAAACGAGCTCTGTGATGACTTTGTGGATAATATAGTGAACTGCGGTGTTGTCTCTGCTCTAGTGAGACATCTTCGGGTGCCAAAGGCCGTGAAAGATGACGATGTCTGTGTTACCAAATCACACCAGCACGAGGTGGAGGAAGGATGTGCGTTCATCCTTGGACTTCTTGGCAAAAAACCAGAGCATCAACAACTCGTTATAGATGCTGGAGCCTTGCCCTGTCTTATAGATTTGTTAAGGAGGCACAAGATCAGTACCATTTCTCGACCACTTATCGGTCTTCTAAGGAGAGTAGCTGATGCAATAAATAATCTTGCCTATGAAAATACCATCATTAAGACTCTTGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGTCACCAAGGTACAGAGAGCAGCTGCAATGGCCTTGGGAACACTTGCATATAATAATGATGACAATAAAAGTCAGATTGTCAAATGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCAAAGGATCCTACAATACATTATGTGGCGGTTGATGTGATTAGAAAACTGGTCGACTCTTCTCCAGATATTGAGAAAGAAGTTCTTCTAGCTAGGGCTTTACAACCTATCATTTGTTTACTAAGTTCCTGCTGTTCGGAGAGCCAAAAAGTAGCAGCCCTTTTACTTGGTCAATTTGCTGCATCTGATTCAAATTGCAAGGTTCATATTTCGCAAAGAGGGGCTATTCCACCATTAGTTGACATGCTTAAGTCTCCAGATGCACATCTTCGGGAAATGTCAGTTTTTGCACTTGGGAAGTTGGCACAGGAATCACATAATCAAGCTGGTATTGCTCATAATGGAGGTATAGAGCCTCTGCTCAATCTTCTTGACTCAAACAATGCACCCCTCCAAAATGATGCTGCTTCTGCTCTCTATTGTCTTGTTGATAATGAGAGACTACTAGTACAAGCCAATCAGCAACATTCTTATTCTAGCAACACCAACTCTTCCAATCTTATTCTTGAATTTGCCATCACCATGAAGAATAAGGAGCAACAAGGCAAAGGTGTAGCCTCATATCTGAAACTCTTCAGTGCTCAACTCGACCTTCTCAATTTCTTTTCTCATGCTCTAGTTTTTGGCATTGGTTTACTCATTGGTATCACGCTGACTTTTTTTATTAAGAACTTCTCCTTCATCAACTTTCAAATCCAACAATTCTCCCTCTCATCCAATAGCCTCATGAAACCACCACCTTTGTCTGATCCCTTTCCTCCAATCTTCTCCAACATCTCATTGTTAACATCAAATAACCAAACAAAAAATGAATCTCACTCCTTCGAGGGATTCGAGGGATTAGTATCTGACTCTCGGTTAAGAGATGACCAAACCAAACCTTCTTCCAATTCGTCCTCGATCAACAACAAAAGGGTGATGGCCAACTTCACCAGAATTGGGTTGAGGGAATTCTTGAAGCCCCCCATGGCCATGCATGATATGAGTGATGAAGAGTTGTTGTGGAGAGCCTCCATGGTTCCCATGGTTCATAAACTCCCATTCAAACAGACCCCAAAGGTTGCATTTATGTTTTTGACAAAAGGTCCTGTGCTATTGGCTCCTCTGTGGGAGAGATTCTTCAAAGGAAATGAAGGGTTGTATTCTATCTACGTCCATTCCCTCCCTTCTTTCAATGGAACAGTGCCTGAAAGCTCTGTGTTTCATGGCCGCAATATTCCAAGTCAGGAGGTAAGGTGGGGTGAGAATAGCATGATAGAGGCAGAGAGACGCCTCCTAGCCAATGCACTTCTTGATTTCTCCAACCAACGTTTTGTACTGCTCTCAGAATCATGCATCCCTTTGTTCAATTTCTCCACCATCTACACTTACCTAATGAACTCAACCAAGACCTTTGTGGAAGCCTATGATCTGCCAGGTGAAGTGGGCCGTGGCAGGTACAGGGCCCAAATGAGGCCCCAAATTAGGCTCTCCCAATGGAGAAAAGGGTCCCAATGGTTCCAAATAGACCGTGCCCTTGCCATTCAAATAGTCTCTGACCACCAATATTTCCCAGTGTTCAAGAAGTATTGCAACCCTAGTTGCTATAGTGATGAGCACTACTTGCCCACAATGGTTAGCATCAAATTTTGGAAGAGGAACTCTAATAGGACCTTGACATGGGTTGATTGGTCAAGGGGTGGACCCCATCCTTCAAAGTACTTCAGAAACGACGTGACTGTTGATTTTTTGAACAATTTAAGGTATGGAAGGTCGTGTGAGTACAATGGACATACCACCAATATTTGTCATTTGTTTGCAAGGAAATTCACGCCTCATGCTTTGGATAGACTGCTGAGATTTGCTCCAAAGATCATGCAATTCAATTGA 2589 0.4338 MENLDSAARPSLKRKLTEDQTDPKVQHLDSEQPGSNFSAKILQQVSLLTSPDHAAVKSAILVLTKLAKNELCDDFVDNIVNCGVVSALVRHLRVPKAVKDDDVCVTKSHQHEVEEGCAFILGLLGKKPEHQQLVIDAGALPCLIDLLRRHKISTISRPLIGLLRRVADAINNLAYENTIIKTLVRMEGGIPPLVELLEFNVTKVQRAAAMALGTLAYNNDDNKSQIVKCNALPTLVLMLRSKDPTIHYVAVDVIRKLVDSSPDIEKEVLLARALQPIICLLSSCCSESQKVAALLLGQFAASDSNCKVHISQRGAIPPLVDMLKSPDAHLREMSVFALGKLAQESHNQAGIAHNGGIEPLLNLLDSNNAPLQNDAASALYCLVDNERLLVQANQQHSYSSNTNSSNLILEFAITMKNKEQQGKGVASYLKLFSAQLDLLNFFSHALVFGIGLLIGITLTFFIKNFSFINFQIQQFSLSSNSLMKPPPLSDPFPPIFSNISLLTSNNQTKNESHSFEGFEGLVSDSRLRDDQTKPSSNSSSINNKRVMANFTRIGLREFLKPPMAMHDMSDEELLWRASMVPMVHKLPFKQTPKVAFMFLTKGPVLLAPLWERFFKGNEGLYSIYVHSLPSFNGTVPESSVFHGRNIPSQEVRWGENSMIEAERRLLANALLDFSNQRFVLLSESCIPLFNFSTIYTYLMNSTKTFVEAYDLPGEVGRGRYRAQMRPQIRLSQWRKGSQWFQIDRALAIQIVSDHQYFPVFKKYCNPSCYSDEHYLPTMVSIKFWKRNSNRTLTWVDWSRGGPHPSKYFRNDVTVDFLNNLRYGRSCEYNGHTTNICHLFARKFTPHALDRLLRFAPKIMQFN 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03023 862 Gene3D - 38 237 IPR011989 -
Pumo6g03023 862 Pfam Core-2/I-Branching enzyme 594 820 IPR003406 GO:0016020|GO:0016757
Pumo6g03023 862 SUPERFAMILY ARM repeat 45 385 IPR016024 -
Pumo6g03023 862 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 223 IPR000225 GO:0005515
Pumo6g03023 862 MobiDBLite consensus disorder prediction 7 26 - -
Pumo6g03023 862 MobiDBLite consensus disorder prediction 1 33 - -
Pumo6g03023 862 Pfam Armadillo/beta-catenin-like repeat 219 257 IPR000225 GO:0005515
Pumo6g03023 862 SMART arm_5 127 168 IPR000225 GO:0005515
Pumo6g03023 862 SMART arm_5 302 343 IPR000225 GO:0005515
Pumo6g03023 862 SMART arm_5 344 384 IPR000225 GO:0005515
Pumo6g03023 862 SMART arm_5 219 259 IPR000225 GO:0005515
Pumo6g03023 862 SMART arm_5 177 217 IPR000225 GO:0005515
Pumo6g03023 862 SMART arm_5 261 301 IPR000225 GO:0005515
Pumo6g03023 862 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
Pumo6g03023 862 Gene3D - 238 398 IPR011989 -
Pumo6g03023 862 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 389 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03023 Pumo-Chr6 72281553 72295302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03023 107 387 U-box Gene Family AT2G23140 24.648 5.99e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03023 - - gmx:100791882 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03023 6 72281553 72295302 Pumo6g03023 6 72281553 72295302 ECH
Pumo6g03023 6 72281553 72295302 Pumo6g03023 6 72281553 72295302 PCT