Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03020 ATGTGTGATGCAATGATTCACTCTTCAAATCCATATCCAATTAAAGTTGAGGTTGGAACATCACCAAAGTTGACAGTGAAGTCCAAGGTTGTGTGCTCCCACAGAGTAGACACTCTCATTGTAACCATTTGCTTTAGGAAATTTGACCTTCAACTAACAAAAGTCACAAGGTTCGATACATTGTTTGGAGTTATAGATAAAAAGCTGCTAAAAAAAATCAACAGAAAAAGGAGAAATACTAGTGTCAGTGGTTGCCCTGTGGCTGTAAAGATATTGAATGCATCCAAAGGAAATGGTGAAGACTTTATCAATGAGGTTGCAAGCATCAGTAGAACTTCTCATGTTAATGTTGTCACACTTCTTGGATTCTGTTTGGAAGGATGCAAGAAAGCTCTCATTTATGAATTTATGCCTAATGGTTCCCTTGACAAGTTTATTTACAATAGGGGACTTGAAGCCACTCTATCTTTGAGTTGGGATAATTTGTGGCAAATTGCCTTAGGGATAGCCCGAGGATTAGAGTACTTGCATAGGGGATGCAACACTCGAATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGATGAGAATCTATGTACCAAGATATCAGATTTTGGGCTTGCAAAGCTTTGTCCAAGGAAAGAGAGCATTATTTCCATTTCAGATGCTAGAGGAACAATTGGATATGTAGCTCCAGAAGTGTGGAACAAACATTTTGGAGGGATTTCACACAAATCTGATGTTTACAGCTATGGAATGGTGCTGCTAGAAATGTTGGGAGTGAGGAAGAATGTTAATGCAGAAGCCAGTCAAACAAGTGAGTACTTCCCAGATTGGATATACAACAGGCTAGAGCAGGGTGGAGATTTGAGAACTGATGGGGAGATAGCCACAGAAGAAAAAGAGATAGAAAGGAGAATGACTGTAGTGGGTTTATGTTGCATTCAAATGTTTCCAAAGGATAGACCTACTATGAGTAGAGTAATAGATATGCTAGAAGGCAACATAAATCCCTTGGAAATGCCCCCAAAACCTGTTCTTTCTTCTCCCACTAGATCGGTACCAGAATTTACCACTAGTTCCTTGCAATCTGGGTAG 1104 0.3904 MCDAMIHSSNPYPIKVEVGTSPKLTVKSKVVCSHRVDTLIVTICFRKFDLQLTKVTRFDTLFGVIDKKLLKKINRKRRNTSVSGCPVAVKILNASKGNGEDFINEVASISRTSHVNVVTLLGFCLEGCKKALIYEFMPNGSLDKFIYNRGLEATLSLSWDNLWQIALGIARGLEYLHRGCNTRILHFDIKPHNILLDENLCTKISDFGLAKLCPRKESIISISDARGTIGYVAPEVWNKHFGGISHKSDVYSYGMVLLEMLGVRKNVNAEASQTSEYFPDWIYNRLEQGGDLRTDGEIATEEKEIERRMTVVGLCCIQMFPKDRPTMSRVIDMLEGNINPLEMPPKPVLSSPTRSVPEFTTSSLQSG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03020 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Pumo6g03020 367 MobiDBLite consensus disorder prediction 353 367 - -
Pumo6g03020 367 MobiDBLite consensus disorder prediction 341 367 - -
Pumo6g03020 367 SUPERFAMILY Protein kinase-like (PK-like) 81 335 IPR011009 -
Pumo6g03020 367 PANTHER RUST RESISTANCE KINASE LR10-RELATED 84 351 IPR045874 GO:0004672
Pumo6g03020 367 SMART serkin_6 67 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03020 367 Gene3D Transferase(Phosphotransferase) domain 1 141 342 - -
Pumo6g03020 367 ProSiteProfiles Protein kinase domain profile. 59 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03020 367 Gene3D Phosphorylase Kinase; domain 1 62 140 - -
Pumo6g03020 367 FunFam PR5-like receptor kinase 137 346 - -
Pumo6g03020 367 Pfam Protein tyrosine and serine/threonine kinase 79 334 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03020 Pumo-Chr6 72239252 72244705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03020 78 363 Receptor kinase-like Gene Family AT1G66910 58.419 1.39e-114 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo6g03020 PK_Tyr_Ser-Thr 7.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03020 - - gmx:100793451 516.538