Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03010 ATGTTAAAACCCTTATACTCCCTCTTTGCACTGTCCATCATCCTTGTGACATGTCATGCTCAAACCTCTAATAATACATCAACAATATGTGCTCCTTCTAATTGTGGTAACCTCTCCATTAGGTACCCTTTTTGGAAGAAGTCCAACACCAACCTTGAAGAGTTTTGTGGTTATCCTGATTTTGGCCTTGAATGTTTGGATGACCATGCCATCATGAGTTTGCCAAGTGACACATACCAAGTCACTGATATAAACTATGATAATCATTCTATTACACTTATTGACATAGATGTGTTGAGCCAATTACCATGTCCTAGGGCAAGACACAATGTTTCCCTACACAACCTCCCTTTGTCTTTCAGCTCATTAGATTTGAATCTAAGTTTCTATTTCAACTGCAGTTCCTATAATTCATCTGTTCAGTCTATAGGGTGCATGAAACATGATAAGAATCAGTCTTATGTGTTTCTGGCCGAGGATGTAGCTGATAATGACCATGTGTGGCTTAGGCAGTGTGAGGATCATGTTGTGGTGACAGTGAAGCAAGATGAGATTGAAATCAGTGATTTGATCACTGGCTTTGGTGATGCTATGAAGAAAGGGTTTGTGCTTGATTGGGTGAGAGCTGAGGATTGTGCAGTGTGCGAGCAGTCTAATGGCTATTGCAGATTTGACCCAGCCACTAAGCAATCCAGGTGCTTATGCACAGATGGCAGAACTGTTGCCAAAAGTTGCAAAAAAGGCAAATGGAGTTTGAGGAGGAAAGTCATTGTAGGTGTTGTTTCTGCTGTGGTGGCAGCACTTGTAGTGGGCATTGTCGTCTATCTCTTCATGCGTAGAAGGAAGAATAGTTACGCAACGTCATATATACAATCTTGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAACTCTAAGCTTTACTCAAAGCTTTGCACCTGGAGTGCACCTCTTCTCCTATGATGAACTTGAAGAGGCCACAAATTACTTTGATGCATCTAAAGAACTAGGAGAAAGGGGCTTTGGGACAGTGTATTTTGGCAAACTACGGGATGGGCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAAGAGAGTTGCACAGTTCATGAATGAAATTAATATCCTAGCAAAGTTAGTTCATCCAAATCTTGTGACATTATATGGATGCACGTCTCGCCACAGCCGTGAACTTCTGCTTGTGTATGAGTACATTCCTAATGGAACCGTTGCTGATCATCTTCATGGTCAACGATCCAAACCTGGAAAACTCCCTTGGCATATTAGAATGAATATTGCTGTGGAGACTGCAAGTGCATTGAAATTTCTTCATCTCAAAGACATCATCCACAGAGATGTGAAAACCAACAACATTCTTCTTGACAGTAACTTCCGCGTCAAAGTGGCGGATTTTGGACTCTCGCGTCTTTTCCCAGATCATGTCACCCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGCTACCAGCTTACTATCAAAAGCGATGTCTATAGCTTTGGAGTGGTGCTGGTTGAGCTGATATCATCCTTGCCTGCTGTCGATATCACAAGGCATAGACATGAAATCAATTTGGCAAACATGGCCATCAACAAGATTCACAGTCAGGCACTGCACGAGCTTGTGGACCCTACCCTTGGGTTTGAATCAGATTTCAAGGTAAGGAAAATGATAAATGCTGTGGCAGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGAGATGAGACCTTCTATGGAAGAAGTGGTGGACACTCTCAAGGATATACAGAGTGATGGCAAACATAAAAGCCAGCCTGAGGTAATGGATATCACAAGCACAGCTGATGATGTTGTGTTGCTGAAGGATGATCCTCCTCCACCATCACCTGATTCTAATGCGGTGAGCAAGTCAACAACACCAAATGCTAGCGGATAA 1977 0.4284 MLKPLYSLFALSIILVTCHAQTSNNTSTICAPSNCGNLSIRYPFWKKSNTNLEEFCGYPDFGLECLDDHAIMSLPSDTYQVTDINYDNHSITLIDIDVLSQLPCPRARHNVSLHNLPLSFSSLDLNLSFYFNCSSYNSSVQSIGCMKHDKNQSYVFLAEDVADNDHVWLRQCEDHVVVTVKQDEIEISDLITGFGDAMKKGFVLDWVRAEDCAVCEQSNGYCRFDPATKQSRCLCTDGRTVAKSCKKGKWSLRRKVIVGVVSAVVAALVVGIVVYLFMRRRKNSYATSYIQSWSLSSDPSSKDTEKGTLSFTQSFAPGVHLFSYDELEEATNYFDASKELGERGFGTVYFGKLRDGRSVAVKRLYENNYKRVAQFMNEINILAKLVHPNLVTLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPGKLPWHIRMNIAVETASALKFLHLKDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPDHVTHVSTAPQGTPGYVDPEYHECYQLTIKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHSQALHELVDPTLGFESDFKVRKMINAVAELAFQCLQSSKEMRPSMEEVVDTLKDIQSDGKHKSQPEVMDITSTADDVVLLKDDPPPPSPDSNAVSKSTTPNASG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03010 658 ProSiteProfiles Protein kinase domain profile. 334 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03010 658 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247
Pumo6g03010 658 FunFam Wall-associated receptor kinase-like 20 411 619 - -
Pumo6g03010 658 SMART serkin_6 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g03010 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Pumo6g03010 658 Pfam Protein tyrosine and serine/threonine kinase 336 606 IPR001245 GO:0004672|GO:0006468
Pumo6g03010 658 Pfam Wall-associated receptor kinase C-terminal 145 238 IPR032872 -
Pumo6g03010 658 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 655 IPR044652 GO:0004672
Pumo6g03010 658 Gene3D Transferase(Phosphotransferase) domain 1 411 632 - -
Pumo6g03010 658 MobiDBLite consensus disorder prediction 611 658 - -
Pumo6g03010 658 SUPERFAMILY Protein kinase-like (PK-like) 310 610 IPR011009 -
Pumo6g03010 658 Gene3D Phosphorylase Kinase; domain 1 308 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03010 Pumo-Chr6 71914992 71963909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03010 20 658 Receptor kinase-like Gene Family AT1G25390 43.531 2.39e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo6g03010 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03010 - - gmx:100800873 722.235