Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02975 ATGGATCCACCACCCCTCTCTGCCGCCACTCAAAAAAACCATCCTGACTCGGTTGAGTCCTTGTCTCCACGTTCCCGCAACTCGGAAACATGGAATGATGAGACTCTACCGGCCGTTCCTGGCGCCAAGCTGCGCCTCATGTGCAGCTATGGTGGCCACATCATGCCACGCCCTCATGACAAGTCTCTCTGCTATGTTGGTGGCGACACCAGGATCGTGGTTGTGGACCGTCACTCGTCGTTGAAAGATCTATGTGCACGGCTTTCCCGAACCATCCTCAATGGAAGACCCTTCACACTCAAGTACCAGCTTCCCAATGAAGACCTTGATAGTCTCATCACTGTCACCACTGATGAAGACCTTGACAACATGGTGGAAGAGTATGATCGGATAACGGCGAAAGGTTCGGCTTCTTCGCGGCTCAGGGTGTTCCTGTTCTTCACCAAACCTGAGGCCACAGTTTCAATGGGGTCACTTCTTGATGATGCCAAGTCAGAGACATGGTTTGTTGATGCACTCAACAACTCTGGAATGTTAAACAGAGTGGTGTCAGATACTGCTGCAGGGGATTCTTTTGTGAACCTTGATGGTGTTGGTGTTGGTGGTGTTAGTGCTAGTGGTTCAAGCAACAACTTGGAGGCTTTGCCTGATGCTAACAACAAGGTTAAGAATTTGCCTGAAGTGGTGCAAGTGCAATCAACACCTGGTTCACCTATGATGGAGAACAGTTCTTCTTCTCCTTCTTTCTCTCCTTCTCTAGCTAATCTGCCTCCAATTCGGGTTCGTGTTGATGACAATGGTAGTAGGCTTCAGCAAGAGAACAAGGTTGGGGTGGTGGTGGAGGAGCAGTTTGCTCAGATGACAATTGCAAGCGGGGCGAAGCCAGATGATGGGTTGGTGAATGTTGTTTCTTCTGCAGCGGCTGTGCCTGTAAATCCTTCAGCTGTGACTATGACATCAGTTGGGGTGGTTACTGCTAGTGATAATGCTATGAATAGAGTTGTTTATGAGGATGAGAGATCAGATCCCGGGTTTCGGAAGCCCCCTCTACCATTGCAGCTTGTGCAGCCAAGGACTAGTGGTGGTTTGGGTCTGCCTTCTCCTGATTCAGTTGCAAGTGATAGTAGTATTGCATCTGCAAATTCTTTCTCCAAGACTGTTTACTATCAAGATCAAGTCCAAGCTGCACTATTTGACAACAAAGTTGTTGCTATGCAAAATGCCAAGAGTGAAATATCTGATCAAGTGATTCAGGTCCCAGGACAACTTCAAGATTCTGGCTACACATTACCCCCACAATTTGATCAAAACAAGCAACAACTCCAGCAGCAGAAGCCATTGGTCCATGCCAGCACTCACTACATCCACCACCCTGCAGCCACAGGTCCAGTGCCAGTTTCATCATACTACCCAGTTTATGCCCCACAACCACAACTTCACCCTCCAATTGGTCAACAACAGTACCCAGTTTATGTGATGTCTGTTGGACCTACACAAGTAACACAACCCTACAACATGGCATTGCAGCCCAATATTGCTGACCCAAATGTGGTAGCCTCAAGCAGGCCATTAATGCCACAAAGTGTTGTTACCTCAGCAGCATACAAGGATGGTACTCCACCCATTTACCCCACCAAGTCAGTTACCCCTACTATACCTGAGGTGACTCCTAGTGTTTACAAGGCTCCTCCTGTGGCATCAAATCCTGGATATGCTCCAATACCTACCAACCAATTTCAGCCACAGTATGTGGGTTTGCCTCAGTTCCATCATCCACCACAATCCATTGCTGTGGCTCCCTCTAGTACTACTACTAATTATGGCTATGAGTATGGTGGCCATGTGCAAGACCAAGCATACTACAGTCAACAACAAACCACCACTGCTCCATTGCTTCCTCAGTACCAATCCATGACCCCAGCTGCAGCTGCTGCGGCACTATCAGATGCTTCAAAACAGTTTCCTGCAGACAACATTCAGCAGCCAAATAGAGCATCACAACCAGTATGA 2010 0.4816 MDPPPLSAATQKNHPDSVESLSPRSRNSETWNDETLPAVPGAKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRHSSLKDLCARLSRTILNGRPFTLKYQLPNEDLDSLITVTTDEDLDNMVEEYDRITAKGSASSRLRVFLFFTKPEATVSMGSLLDDAKSETWFVDALNNSGMLNRVVSDTAAGDSFVNLDGVGVGGVSASGSSNNLEALPDANNKVKNLPEVVQVQSTPGSPMMENSSSSPSFSPSLANLPPIRVRVDDNGSRLQQENKVGVVVEEQFAQMTIASGAKPDDGLVNVVSSAAAVPVNPSAVTMTSVGVVTASDNAMNRVVYEDERSDPGFRKPPLPLQLVQPRTSGGLGLPSPDSVASDSSIASANSFSKTVYYQDQVQAALFDNKVVAMQNAKSEISDQVIQVPGQLQDSGYTLPPQFDQNKQQLQQQKPLVHASTHYIHHPAATGPVPVSSYYPVYAPQPQLHPPIGQQQYPVYVMSVGPTQVTQPYNMALQPNIADPNVVASSRPLMPQSVVTSAAYKDGTPPIYPTKSVTPTIPEVTPSVYKAPPVASNPGYAPIPTNQFQPQYVGLPQFHHPPQSIAVAPSSTTTNYGYEYGGHVQDQAYYSQQQTTTAPLLPQYQSMTPAAAAAALSDASKQFPADNIQQPNRASQPV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02975 669 ProSiteProfiles PB1 domain profile. 43 146 IPR000270 GO:0005515
Pumo6g02975 669 PANTHER OS05G0427100 PROTEIN-RELATED 14 493 - -
Pumo6g02975 669 MobiDBLite consensus disorder prediction 10 34 - -
Pumo6g02975 669 CDD PB1_UP2 47 146 - -
Pumo6g02975 669 Gene3D - 63 147 - -
Pumo6g02975 669 SMART PB1_new 58 148 IPR000270 GO:0005515
Pumo6g02975 669 SUPERFAMILY CAD & PB1 domains 59 156 - -
Pumo6g02975 669 MobiDBLite consensus disorder prediction 1 36 - -
Pumo6g02975 669 MobiDBLite consensus disorder prediction 647 669 - -
Pumo6g02975 669 MobiDBLite consensus disorder prediction 653 669 - -
Pumo6g02975 669 Pfam PB1 domain 59 146 IPR000270 GO:0005515
Pumo6g02975 669 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 63 148 - -
Pumo6g02975 669 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02975 Pumo-Chr6 71301463 71303800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02975 43 175 MAP Kinase Kinase Kinase AT5G57610 45.185 4.27e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02975 - - gmx:100797907 1092.8