Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02973 ATGCCTGTTGTGACAGAACACATGAAATGGAGAAGACCAAGAAACCAATTCAGGCACCCCATTTCAGAAACAGATGATCCAAACCCTCAAATCCCTTCTATAATCCAATCCTCTCACAGCAAATCCACCATCTCCTCTCTCTTATCTTCTTTCTCCACCACCTCCAATGAAACCACACATGCCAGAGACCAAAACAGAAACAAAAACAACAGCAACAGAAAATTCTCTGCAGCAACCTTCAGAGGCTTCGGCTGCACCGCCGCTGCATCGCAGAAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCGGCGGATTGGGAAGGGAAGAGGAGCAGAAAGAAGAAGCACAGAAGGAACAGTGGCAAGACATGTGATGGGGTTGTTGATGATGTTTCTGGTGGGACATGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACTGATGCTGATGCTGCTGCATCTGTGGAATGTGTTGTGGCTAGGAAGAATGTGTCTTCAAGAGGAAAAATTGATGTGGTGGAGAGGGTAACACACAGGGAGCGTTCATCTTATTTTGGAAGGCGCGCTGTAAAGCCAGAAAGCTTCTCCTTTTTGGATGATGAACCTGACATTTTTGCAGCACGCCCTGGATTAGAGCCTTTTAGAACTGCTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGAAAAATGATGGGTGGACGATTTAATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAACTGGGTGAGAGAATCGGTTATGTCAACACTGGGCTCAAAGAAGATGAGATGGGACTCAACATAAGGAAAGTTAAGCTTTCAAGTTCAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGCGTTTGTCAGGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGAACACAGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAACTTCTGCCCAGTTTGTAAGCAAGAAGTTGTGGTTCGACACTAA 1092 0.4478 MPVVTEHMKWRRPRNQFRHPISETDDPNPQIPSIIQSSHSKSTISSLLSSFSTTSNETTHARDQNRNKNNSNRKFSAATFRGFGCTAAASQKVSVPAVIRSSADWEGKRSRKKKHRRNSGKTCDGVVDDVSGGTCVDFQDVWCGPGIGFSTDADAAASVECVVARKNVSSRGKIDVVERVTHRERSSYFGRRAVKPESFSFLDDEPDIFAARPGLEPFRTARFYRHVPHPSPDGLAEIMILQGRKMMGGRFNSHDQFRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMGLNIRKVKLSSSNDTSKHQLDKKCSVCQEEYESDDELGRLKCEHSYHFQCIKQWLVHKNFCPVCKQEVVVRH 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02973 363 SMART ring_2 315 355 IPR001841 -
Pumo6g02973 363 Pfam Ring finger domain 314 356 IPR001841 -
Pumo6g02973 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 29 359 IPR045191 GO:0061630
Pumo6g02973 363 MobiDBLite consensus disorder prediction 7 21 - -
Pumo6g02973 363 MobiDBLite consensus disorder prediction 22 60 - -
Pumo6g02973 363 MobiDBLite consensus disorder prediction 100 122 - -
Pumo6g02973 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 362 IPR013083 -
Pumo6g02973 363 ProSiteProfiles Zinc finger RING-type profile. 315 356 IPR001841 -
Pumo6g02973 363 SUPERFAMILY RING/U-box 314 361 - -
Pumo6g02973 363 FunFam E3 ubiquitin-protein ligase rnf12-A 282 361 - -
Pumo6g02973 363 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02973 Pumo-Chr6 71278814 71284702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02973 4 270 C3H Transcription Factor Family AT1G73760 39.721 5.52e-49 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02973 - - gmx:100818517 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02973 6 71278814 71284702 Pumo6g02973 6 71278814 71284702 ECH